Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03342 ATGCAAATCATCAATTTTGCTGCTTCTTCTTCTTCTTCGTCTTCCTCTGTTGCGTCTCTTAAAACATATGATGTTTTTATTAGCTTTCGAGGTGAAGATACTCGTAAGAGCTTCACAAGCCATCTTCACGATGCTCTGATCCAAAAGAAAATCGAAACCTATATAGACTACAGGCTTGAAAAAGGAGAGGAGATTTCGCAAGCACTCATCAAAGCAATTGAAGAGTCACTTGTATCTGTTGTTATTTTCTCGAAAGACTATTCGTCTTCCAAGTGGTGTTTGGATGAGATCAGTAAGATTATGGAATGCAAGAAGGATGAAGGACAGGTTGTGATACCTGTGTTCTATGAAATTGATCCATCACATGTAAGGAAGCAAACAGGGAGTTACGAGGAAGCGTTTGCAAAACATGAGGGAGATCTGAAGATCTCAAAAGAAAGAGTGCAAAAATGGAGATCTGCTCTCACGGAAGCAGCTAATTTGGCTGGTTGGGACTCTGAAACTTATAGGACTGAATCTGAATTCATTAAGGATATTGTTAAAGACATTATGCAAAAACTAAATCTCAAATGCCCAATTGAATTGAAAGGATTGGTTGGAATTGAGGAAAATTATGAAGGGGTTCAATCCTTATTGGAAATTGACTCAAGTGAAGTTCGAATGATTGGAATATGGGGCATGGGTGGTATAGGTAAGACCACTCTGGCAATTGCTTTACATGCCAAACTGTATTCTAAATTTGAAGGTCATTGCTTTCTCACAAGTGTAAGGGAACAGTCAGAAAAGTATGGTCTAAATGTCTTACGCAAAAAACTATTTTCTGAGCTATTAGAGGAAGAAAATCTTCATGACCATTTTGTGAGAAGAAGACTTAGACGTAAAAAGGTTTTTATTGTTTTGGATGATGTGGCTTCCTCAAAACAGTTAGAAGATCTAATTGGTGATTATAATTGTTTGGGACCAGGAAGTAGAGTGATTGTAACAACTAGAGATAAACACATATTTAGCCATGTTGATGGAATATATGAGGTCAAAGAATTGAATGACTATGACTCTCTTCAACTTTTTTATTTGAATACATTCAGAGAAAATCATCCTAAAAATGGATATGAAGAGCTATCAAAAAGTGTAATTGCCTATTGCAAAGGCAACCCTTTGGCTTTAAAAGTTTTGGGTGCACGCCTTCGCTTAAGAAGTAAAAAAATATGGAAAAGTGAATTGAGAAAGCTCCAAAAGATTCCAAATGTGGAAATTCATAATGTCTTAAAGTTGAGTCTTGATGACTTAGATCCTTGTGAACGGGACATATTTCTAGACATTGCATGCTTCTTCAAAGGAGAATATAGAGATGATGTAACAAGTATACTAGAGGCTTATTTCTATGCAACCACTGGGATAGAAGTCCTCATAGATAAGTCTCTTATAACTATTTCAAAGAGGCTTACAATAGAAATGCATGACTTGATACAAGAAATGGGTTGGAATATTGTTCGTCAAGAATCAAGCAAAGAACGTGGAAGACAGAGTCGATTGTGGGATCCTAAGGATGGAACTAAAGCTATAGAAGGCATACTTTTGGATGTGGCTAAAATTGAGGATTTATATCTGAGCTCTAATTCCTTTATAGAAATGACTAACATAAGATTTCTTAAATTCTATTATGGGATGTGGAGTGGCAAATGTAAAATACACTTTCCTAATGGTCTTGATTCATTGCCTAACAAATTGAGTTACCTTCAATGGCACGGATATGGTTTGGGGTCTTTACCTTCAACCTTTTGTGCTAAATTGCTTGTAGAGCTTGTCATGCCCTATAGCAACCTTGAAAAGCTTTGGGACGGAGTTCAGAATCTTGTGAACTTAAAGGAAATTGACCTTCGATTCTCTGGAAACCTGATTGAGGTCCCAGACTTATCTATGGCCACAAATCTAGAAGGATTATCTCTTTCTCAGTGTAAAAGTTTGCGTCAAGTCCATCCATCCATTTTATCTCTCAACAAGCTTCAGGAACTGGATTTAGAAGGCTGCACAGAGATTGAAAGCATTGAAACTAATGTTCATCTAAAATCTCTACGTAACATCCGTCTGAGCAACTGCTCATCCCTAAAGGAATTTTCAGTCTCCTCAGAGGAACTACTGAGGTTGTGGTTAAATGGTACAAGTATTCAAAAATTGCCTTCATCAATATGGCGTTGTGAAAAACTTGGCTATATTGATTTAAATGGTTGTGACAATCTTGACAGTATTGAGATCAACAAGTTAACTTATGATCCTGGAATGAGATCTCTTAATACTCTAGACTTTTCTGGGTGTAAACAACTCAATGCAAAGAATCTATGTTCTATCCTTGATGGTCAGCAATCTTTGAAATTGCTTCGTCTAGAAAATTGTCATAACTTACAATCACTCCCTGATAATATTGGTTTATTATCATCATTAGAGAGGTTAACACTAAGTGGAAGCAGTGTTGAGAGCTTACCTACAAACATTAAGAATCTTCAGAAGCTGAAAGAGCTTAAATTAGATAATTGCAAGAATCTTGTGTCCTTGCCAGAGCTTCCATCTTCCCTGCTAGTGTTAAGTGCTGTCAATTGCACATCTTTGGTGATAGACTTCACAAAATTGCAAATATCCTTTTCATTTAAACATGCACTTCGTGAACGTCCTGCATCTGTTTTTCTCCCTGGAGGCCAAGTTCCAGACAGGTTTAGTTTCCATGCTGAAGGGGCTTCAATAACTATTCCACATATTCCAGAGTCAGGCTTATGTGGGTTTATTTATTGCCTCATTCTTTCTCAATCACCACCAAATAATAGATATGGATATGTTGCCTGTTATATCTCCAATTATTCTGAAAAGATCAGTAGCAGAGGTACCTTTCTTGGGGATCAGAATTTAATTTCAGATCACATGTTTCTATGGTATTATGACATTAAAACAGGTGGAAGTGGTTTTTATATAAGACTATACAAAAGGGTGGAGTGTGGGATCCTTATAACTTATCATTTGAATTCCTTCTTGAAGATGAGGATGGAGAATGGTCAACTAATGGGGGGATAA 3060 0.368 MQIINFAASSSSSSSSVASLKTYDVFISFRGEDTRKSFTSHLHDALIQKKIETYIDYRLEKGEEISQALIKAIEESLVSVVIFSKDYSSSKWCLDEISKIMECKKDEGQVVIPVFYEIDPSHVRKQTGSYEEAFAKHEGDLKISKERVQKWRSALTEAANLAGWDSETYRTESEFIKDIVKDIMQKLNLKCPIELKGLVGIEENYEGVQSLLEIDSSEVRMIGIWGMGGIGKTTLAIALHAKLYSKFEGHCFLTSVREQSEKYGLNVLRKKLFSELLEEENLHDHFVRRRLRRKKVFIVLDDVASSKQLEDLIGDYNCLGPGSRVIVTTRDKHIFSHVDGIYEVKELNDYDSLQLFYLNTFRENHPKNGYEELSKSVIAYCKGNPLALKVLGARLRLRSKKIWKSELRKLQKIPNVEIHNVLKLSLDDLDPCERDIFLDIACFFKGEYRDDVTSILEAYFYATTGIEVLIDKSLITISKRLTIEMHDLIQEMGWNIVRQESSKERGRQSRLWDPKDGTKAIEGILLDVAKIEDLYLSSNSFIEMTNIRFLKFYYGMWSGKCKIHFPNGLDSLPNKLSYLQWHGYGLGSLPSTFCAKLLVELVMPYSNLEKLWDGVQNLVNLKEIDLRFSGNLIEVPDLSMATNLEGLSLSQCKSLRQVHPSILSLNKLQELDLEGCTEIESIETNVHLKSLRNIRLSNCSSLKEFSVSSEELLRLWLNGTSIQKLPSSIWRCEKLGYIDLNGCDNLDSIEINKLTYDPGMRSLNTLDFSGCKQLNAKNLCSILDGQQSLKLLRLENCHNLQSLPDNIGLLSSLERLTLSGSSVESLPTNIKNLQKLKELKLDNCKNLVSLPELPSSLLVLSAVNCTSLVIDFTKLQISFSFKHALRERPASVFLPGGQVPDRFSFHAEGASITIPHIPESGLCGFIYCLILSQSPPNNRYGYVACYISNYSEKISSRGTFLGDQNLISDHMFLWYYDIKTGGSGFYIRLYKRVECGILITYHLNSFLKMRMENGQLMGG. 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03342 1019 PRINTS Disease resistance protein signature 221 236 - -
Seca6g03342 1019 PRINTS Disease resistance protein signature 831 847 - -
Seca6g03342 1019 PRINTS Disease resistance protein signature 381 395 - -
Seca6g03342 1019 PRINTS Disease resistance protein signature 290 304 - -
Seca6g03342 1019 Pfam NB-ARC domain 209 414 IPR002182 GO:0043531
Seca6g03342 1019 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 164 IPR035897 -
Seca6g03342 1019 Gene3D - 20 184 IPR035897 -
Seca6g03342 1019 SMART till_3 22 161 IPR000157 GO:0007165
Seca6g03342 1019 SUPERFAMILY L domain-like 485 868 - -
Seca6g03342 1019 FunFam Disease resistance protein RPS4 518 710 - -
Seca6g03342 1019 Pfam Leucine Rich Repeat 598 616 IPR011713 -
Seca6g03342 1019 Gene3D - 185 344 IPR027417 -
Seca6g03342 1019 ProSiteProfiles TIR domain profile. 21 187 IPR000157 GO:0007165
Seca6g03342 1019 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 748 IPR044974 GO:0006952
Seca6g03342 1019 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 189 - -
Seca6g03342 1019 Gene3D - 346 430 IPR042197 -
Seca6g03342 1019 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 440 IPR027417 -
Seca6g03342 1019 Pfam TIR domain 23 193 IPR000157 GO:0007165
Seca6g03342 1019 Gene3D Ribonuclease Inhibitor 515 711 IPR032675 -
Seca6g03342 1019 Gene3D Ribonuclease Inhibitor 712 879 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03342 Seca-Chr6 100492136 100501835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03342 18 839 WRKY Transcription Factor Family AT4G12020 33.412 6.39e-115 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03342 - - gsj:114410062 1346.64