Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03338 ATGGATGTTCAAGTGATAAACGTGGAAGAAGGAAGTGGTCATGAAGATAAGGCAGATGATGGGGATGCAGAACCTAGTGACGGTGAAATTAATAATGCTGAGAACCCTGGATCTCATGTTGAGGATGGGATTTCTGAGCCATATGTGGGTATGGAATTTGATTCCGAAGAAGTTGCTAAGACTTTCTATGATGAGTATGCTAGACGCATGGGTTTCAGCTCTAAAATTGGCCCACGTAATCGCTCTAAAGCTGATGGGTCAAATATGTATCGGGAGTTTGTGTGTGGTAAGGAAGGTTTGAAAAAAAAGTTTAATGATACTTGTGATGCAATGATTAGGATTGAGCTAAAGAGTCAAAATAAATGGGTTGTAACAAAATTTGTGAAGGAGCATAGTCATTCCCTGGTGAGTTCCAATAAAGCAAACAACCTTCGGCCACGTAAGCATTTTTCCAGTGTTGGAAGGACAATGCCTGAAACTTATCAAGGAGTTGGACTTGTTCCTAGTGGTGTCATGTATGTATCTATGGATGGGAATCGCATTTCTAATCAGAATACTCATGGGATGCTGAATATTCATGCTGCTGCCACCACTGATCCAAGTCATCCCGTTAAAACTTTTCCACTCATGAATTATACTGTCAGGCCACCTTTTCAAAACAGGACATTGGGTAGGGATGCTCATAATCTGCTGGAGTATTTTAAGAAAATGCAGGCTGAGAACCCTGGTTTCTTCTATGCTATACAACTCGATGAAAACAATCATATGTCTAATGTCTTTTGGGCAGATGCAAGATCAAGGACAGCTTACAGTCATTTTGGTGATGCAGTTCATCTGGACACAACATACAGAGTTAATCAATACAGAGTTCCATTTGCTCCTTTTACTGGGGTAAACCATCATGGTCAGATGATCCTGTTTGGTTGTGCACTCCTTTTGGATGACTCTGAGGCATCCTTTTTGTGGCTCTTTAAGACATTTCTTACTGCAATGAATGATCGCCAGCCTGTCTCTATAATTACTGATCAAGACAAAGCCATACAGATAGCAGTTTCACAAGTTTTCCCACAAGGTCGTCACTGTATTAACAAATGGCATGTGTTGAGAGAAGGCCAAGAAAAGTTAGCCCATGTATGTCTTGCGCATCCAAGTTTTCAGTTTGAACTTTATAATTGTATTAACCTGACAGAAACCATTGAGGAGTTTGAGTCATCTTGGAATTCTATCCTTGATAAATATGAACTCAGAAGAAATGATTGGCTTCAATCACTATATAATTCTCGCGCTCAATGGGTTCCAGCATACTTCCGTGATTCATTTTTTGCTGCAATATCTCCTAATCAAGGATTTGATGGTTCTTTTTTTGATGGTTACGTCAACCAACAGACAACATTGCCATTGTTCTTTAGGCAGTATGAAAGAGCTTTAGAGAGCTGGATTGAAAAGGAAATAGAGGCTGATTTTGAGACAATTTGCACAACACCGGTTTTAAAGACACCTTCACCAATGGAGAAACAGGCTGCTAACCTTTATACGAGAAAAATATTTTCAAAGTTTCAGGAAGAGCTAGTTGAAACATTTGTTTACACTGCAAATAGAATTGAAGGAGATGGGGAAAATAGCACATTCAGGGTTGCAAAATTTGAGGATGACCAGAAGGCATATATTGTCACATTAAACCATTCTGAGTTGAGAGCTAATTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTCTTAACTGTTTTCACTGTAACAAATGTACTTACTTTACCATCCCATTACATCTTAAAACGGTGGACACGAAATGCAAAAGGTAGTGCTGGATTGGATGAACGTGGTGGTGAATCACATGGACAGGAATCTCTGTCATCAAGGTATAGTAGTCTATGCAGGGAAGCTATCAGATATGCTGAGGAAGGGGCAGTAAGTGTGGAAACTTATAATGCTGCAATGAGTGGTCTTAGAGAAGGTGGAAAGAAGGTTTCCGCTTTGAAAAGAAGTGTTGCCAAAGTTACACCTCCTAATAATCAAGTCAGTGGGACTGCTTATGATGACAGGAAAACTACTACTTCTACTTTGGATACAACTCCTCTTTTGTGGCCCCGGCAAGATGAATTAACAAGGAGGTTTAATCTTAACGATGCTGGAGGTACTGTTCAATCAGTTGCTGATCTAAATTTGCCACGAATGGCTCCAGTGTCTCTTCATCGAGATGATAGTCCATCTGAAAACATGGTGGTTCTTCCATGCCTAAAATCAATGACATGGGTAATGGAGAACAAAAATTCAAGTCCAGGGAATAGAGTAGCTGTTATCAATCTGAAGTTGCAAGATTATAGCAGGACTCCGTCAACAGAATCTGAGGTTAAGTTTCAGCTCTCAAGAGTTTCTTTGGAACCAATGTTGAAGTCTATGGCCTACATCAGTGAACAGCTCTCAACACCAGCTAATAAGGTTGCTGTAATAAATCTCAAGCTTCAGGATACTGAGACAACTACTGGTGAGTCTGAAGTGAAGTTTCAGGTGTCCAGGGATACGTTGGGTGCCATGCTACGGTCAATGGCTTATATCCGTGAGCAACTATCTTCTGCTGTAACTGGCGATGCACAGTCAGAACCTCTATTGAAAAAGCATAGGAAGTAA 2658 0.4033 MDVQVINVEEGSGHEDKADDGDAEPSDGEINNAENPGSHVEDGISEPYVGMEFDSEEVAKTFYDEYARRMGFSSKIGPRNRSKADGSNMYREFVCGKEGLKKKFNDTCDAMIRIELKSQNKWVVTKFVKEHSHSLVSSNKANNLRPRKHFSSVGRTMPETYQGVGLVPSGVMYVSMDGNRISNQNTHGMLNIHAAATTDPSHPVKTFPLMNYTVRPPFQNRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDENNHMSNVFWADARSRTAYSHFGDAVHLDTTYRVNQYRVPFAPFTGVNHHGQMILFGCALLLDDSEASFLWLFKTFLTAMNDRQPVSIITDQDKAIQIAVSQVFPQGRHCINKWHVLREGQEKLAHVCLAHPSFQFELYNCINLTETIEEFESSWNSILDKYELRRNDWLQSLYNSRAQWVPAYFRDSFFAAISPNQGFDGSFFDGYVNQQTTLPLFFRQYERALESWIEKEIEADFETICTTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFVYTANRIEGDGENSTFRVAKFEDDQKAYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKGSAGLDERGGESHGQESLSSRYSSLCREAIRYAEEGAVSVETYNAAMSGLREGGKKVSALKRSVAKVTPPNNQVSGTAYDDRKTTTSTLDTTPLLWPRQDELTRRFNLNDAGGTVQSVADLNLPRMAPVSLHRDDSPSENMVVLPCLKSMTWVMENKNSSPGNRVAVINLKLQDYSRTPSTESEVKFQLSRVSLEPMLKSMAYISEQLSTPANKVAVINLKLQDTETTTGESEVKFQVSRDTLGAMLRSMAYIREQLSSAVTGDAQSEPLLKKHRK. 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03338 885 ProSiteProfiles Zinc finger SWIM-type profile. 555 591 IPR007527 GO:0008270
Seca6g03338 885 MobiDBLite consensus disorder prediction 672 694 - -
Seca6g03338 885 SMART 26again6 566 593 IPR006564 GO:0008270
Seca6g03338 885 Pfam SWIM zinc finger 555 589 IPR007527 GO:0008270
Seca6g03338 885 Pfam FAR1 DNA-binding domain 61 136 IPR004330 -
Seca6g03338 885 MobiDBLite consensus disorder prediction 674 694 - -
Seca6g03338 885 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 34 667 IPR031052 GO:0006355
Seca6g03338 885 MobiDBLite consensus disorder prediction 1 41 - -
Seca6g03338 885 Pfam MULE transposase domain 277 368 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03338 Seca-Chr6 100360040 100367844 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g03338 MULE 5.3e-24 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03338 - - gmx:100786516 1532.31