Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03333 ATGTCAGGTCGAGGTGGAAGGGAGCGGTTTAGGAGGGATTATCCTTCAAGATGTGAAGATAATAAGGGGAATGGGGTTACTGGGCGTGGCAGTGGCAACAGCAACAACCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCCCACAACATTGTAGAGGATGAACTTGCTCATCATTTCTTACAGTTTGGGCCGCTGGAGAGTGTCGCGTTCCAGCCTGGCCGCAGCTATGCTTTCATCAACTTCAAAAGAGATGAAGATGCCATTGATGCCATGAGGGCACTGCAAGGTTTTCCTCTTGATGGCAACCCGTTTAGAATCGAGTTTGCAAAGGCGGATAAGCCATCAACAATATCACGTGATGAAGATTACTCATGGGATGAGCGAAGGTCAACATTAAGGGGATCCCCTTTCTCCCAAAGAGAGTTTAGGGGACGCCATGGTAGCCCTGAACCGCATTATTCTGACAAATCCAAGCTGAGAGATAAAAGTCCAGAGCCTAGTGAGGTTTTGTGGATTGGGTTCCCAGCTCAGTTAAAGGTGGATGAATCAATTTTGAGAAAGGCTTTTTCTCCATTTGGTGAGATTGTGAAGATTACCACATTTCCGGGTCGTAGTTATGCCTTTGTTCGCTTTAGAAGTCTGTCATCAGCAGGCAGAGCAAAAGATGCTCTGAAGGGAAAGTTATTTGGGAATCCCCGTGTACATATTTGTTTTGCCAAGAGTGAAACAGGTTCATCAAGCAGTGGGAGGAGCTCATTTAATGCCCCTCATTCCCCATTTTATAAGTCAAGTGGTCGTGATGGATCATCTGAAAACCTCAGGCAGGATAGGAGCTTCAGTGGAGAACAGAACATAGGTTCCCCAAACCGATTCCTGAATTGGGATGCTAGAGATTCTGATTCTTATGATTTTAACAGAAGGGGTTCTTCACGGGCTGGTGGAACTAACACATATGAGCAAAGGAAAGTTGGAGAGAAGGGGACTCCACTAGGATTATCAAAAGAAATCTATGAACATATAAATAGTCCATCAAGAGAAAGACATGTTCATCTGCGCGACTTTCCACATAAGTTTCCTCAAAAGGGCGCATTCTTTGAAGATATGCAGGCCTTGCCAGAAGATTTTCCCTATCAACGCGAGGCGAAAAAGCTAAAGACTGGTTCTTCTCCTCATGAGAGAGAGCTTCCAGAGTATCCTTTCTCTGAGTTAGAAAGACAGAAACATGTTTTCCCAAGATTATTGTCTGATTTTCCCCAACGTGAGCCTCTTGATAAAAAATTTGATGCTGGAAATTTTACCTATGGACAAACACTTGATCACCCACCAAATTCACCTCTGGCTCGCTTAGATAGACATGAAGGCTGGAAACCTCATGATAGTTTCCAAATGGGTCCTGGTGCTCTGCAATCAAATTTTGTTGAGAAGAAAAGATTCACACCTGAACCTGATAATTCATCTTTAACTGAGTGGAAATGGGAAGGAACCATAGCTAAAGGTGGAACCCCTGTTTGTCGTGCACGCTGCTTCCCTGTGGGGAAAGTCCTAGATATCATGTTACCTGACTTCTTGGATTGCACTGCAAGAACTGGTCTGGACATGCTCTCAAAGCATTACTACCAAGCAGTTGGTGTTTGGGTTGTTTTCTTTGTGCCTGGAAGTGATGTTGACATTGAACTCTACAACGAATTTATGCATTATCTGGAAGAAAAGCAGCGGGCTGCAGTTGCCAAGTTGGATGACAAGACCACCTTATTTCTCGTACCTCCATCGGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGTAAATTGAGCATATCTGGTGTTATTCTGAGGTTGGAGTATCCTGGTTTAAATCAGGGTCCCATAGACATTGAAAGAGAAATGAAAAACGAAAACCTGTTGTCCTATAATGAAAATATGTTGTATCCAAAATCATCATTTCAATCAGGACTTATGCCTACTTCCCAATCTATATCAGAATTCGGTAATCCTGGAATCAGCAATCTTTCATTTCTGGGAAATAAATTTGCAGCAGCTCCATCAGTTTCAGATTCAGCTCGTGCTGTGGTTAGCATGTCTGAGTCTCATGATGAAAGAAGTCGTGACTATCCTCCAATCCAGTTGCGGACGTCAGGACCAAACTGGTCTTCTCACAATATGCAGAACTTAATCTCTAATAGAACTTTACCATTGCAACCATCAAGCGGTGCTGTTGCAGAAGAGCGTCAGCCCATCATTCCAAGGGCAATGCCAGATATAAACTCAATTCAATATTCAAGTGGAATTTCTGGTAGCAACTCATCTTATCCAGATCCTTTATCAATGCCTGTGGGATCCCTGCCACCAGAACAGCTTGCACAAATAGCTGCATCTCTTCTTGAGCAGAAGAGGCAATCTGGAAGCACTTTGAATGCATCTGCATTGGGTGATCCCAGGCAGAACAGATTTGATGGGTCTGACACCTCATCCAGACCATCCCAGAAACATGCTACAGAAAATAACCTGGTGAATTCTGAACTTTCAACGTCTCAGTTGGGCCAAATTCTACAGTTGCAAAAGCAACAACAGGTGCCAAATGTGCCTCAATTGTCACAGATGGTTCAAAGAGAACCACAAAGAGAGGTTGATGGAAATCAGCAGTTGACAGATAGTCGCTTGCAGGAAGACGCTGAAGCTGATCCTCAGAAACGTCTACAAGCAACATTACAGCTGGCTGCTGTTCTTCTTCAGCAAATCCAGCAAGGAAAAGGAAGTTGA 2760 0.4391 MSGRGGRERFRRDYPSRCEDNKGNGVTGRGSGNSNNPPSRHLWVGNLSHNIVEDELAHHFLQFGPLESVAFQPGRSYAFINFKRDEDAIDAMRALQGFPLDGNPFRIEFAKADKPSTISRDEDYSWDERRSTLRGSPFSQREFRGRHGSPEPHYSDKSKLRDKSPEPSEVLWIGFPAQLKVDESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLSSAGRAKDALKGKLFGNPRVHICFAKSETGSSSSGRSSFNAPHSPFYKSSGRDGSSENLRQDRSFSGEQNIGSPNRFLNWDARDSDSYDFNRRGSSRAGGTNTYEQRKVGEKGTPLGLSKEIYEHINSPSRERHVHLRDFPHKFPQKGAFFEDMQALPEDFPYQREAKKLKTGSSPHERELPEYPFSELERQKHVFPRLLSDFPQREPLDKKFDAGNFTYGQTLDHPPNSPLARLDRHEGWKPHDSFQMGPGALQSNFVEKKRFTPEPDNSSLTEWKWEGTIAKGGTPVCRARCFPVGKVLDIMLPDFLDCTARTGLDMLSKHYYQAVGVWVVFFVPGSDVDIELYNEFMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPIDIEREMKNENLLSYNENMLYPKSSFQSGLMPTSQSISEFGNPGISNLSFLGNKFAAAPSVSDSARAVVSMSESHDERSRDYPPIQLRTSGPNWSSHNMQNLISNRTLPLQPSSGAVAEERQPIIPRAMPDINSIQYSSGISGSNSSYPDPLSMPVGSLPPEQLAQIAASLLEQKRQSGSTLNASALGDPRQNRFDGSDTSSRPSQKHATENNLVNSELSTSQLGQILQLQKQQQVPNVPQLSQMVQREPQREVDGNQQLTDSRLQEDAEADPQKRLQATLQLAAVLLQQIQQGKGS. 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03333 919 MobiDBLite consensus disorder prediction 1 39 - -
Seca6g03333 919 SMART rrm1_1 170 238 IPR000504 GO:0003723
Seca6g03333 919 SMART rrm1_1 41 108 IPR000504 GO:0003723
Seca6g03333 919 MobiDBLite consensus disorder prediction 758 774 - -
Seca6g03333 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 169 242 IPR000504 GO:0003723
Seca6g03333 919 MobiDBLite consensus disorder prediction 140 163 - -
Seca6g03333 919 MobiDBLite consensus disorder prediction 1 19 - -
Seca6g03333 919 MobiDBLite consensus disorder prediction 243 330 - -
Seca6g03333 919 SUPERFAMILY RNA-binding domain, RBD 29 120 IPR035979 GO:0003676
Seca6g03333 919 MobiDBLite consensus disorder prediction 243 291 - -
Seca6g03333 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 104 IPR000504 GO:0003723
Seca6g03333 919 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 181 234 IPR000504 GO:0003723
Seca6g03333 919 Pfam SPOC domain 487 601 IPR012921 -
Seca6g03333 919 CDD RRM_SF 180 237 - -
Seca6g03333 919 Gene3D - 155 250 IPR012677 -
Seca6g03333 919 MobiDBLite consensus disorder prediction 131 163 - -
Seca6g03333 919 SUPERFAMILY RNA-binding domain, RBD 180 270 IPR035979 GO:0003676
Seca6g03333 919 MobiDBLite consensus disorder prediction 758 781 - -
Seca6g03333 919 FunFam RNA recognition motif (RRM)-containing protein 155 248 - -
Seca6g03333 919 MobiDBLite consensus disorder prediction 695 716 - -
Seca6g03333 919 MobiDBLite consensus disorder prediction 861 896 - -
Seca6g03333 919 CDD RRM_SF 42 108 - -
Seca6g03333 919 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 112 IPR000504 GO:0003723
Seca6g03333 919 MobiDBLite consensus disorder prediction 797 836 - -
Seca6g03333 919 PANTHER RNA RECOGNITION MOTIF-CONTAINING 33 913 - -
Seca6g03333 919 MobiDBLite consensus disorder prediction 861 886 - -
Seca6g03333 919 CDD SPOC_FPA-like 492 611 - -
Seca6g03333 919 Gene3D - 20 119 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03333 Seca-Chr6 100318961 100332329 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03333 33 241 Eukaryotic Initiation Factors Gene Family AT4G34110 23.874 3.20e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03333 - - gmx:100811668 1357.43