Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03324 ATGGAACATAAAGTAGCAACAGCAAGTGAAGGACAACCTATCAGATGTAAAGCGGCGGTTGCAAGAAGAGCCGGTGAGCCATTGGTGATGGAAGAGATCATTGTGGCGCCACCAATGCCTCGTGAGGTTCGGATTCGTATTATATGTACCTCCCTCTGCCACAGCGATATCACTCTTTGGAAGATGAAGGATCCTCCTGGCTTTTTTCCGAGAATTCTGGGACATGAGGCGGTTGGGGTAGTGGAAAGTGTAGGGAAGGATGTGACTGAAGTTACAAAAGGAGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTGTAGATTGCAAATCAACCAAGAGCAACCGTTGTACTAATTTCCCTTTCAAGGTGTCTCCTTGGATGCCTAGATATGGTGGTACCACTAGATTCACTGACCTAAATGGAGAGATCATATACCATTTCATGTTTGTTTCAAGTTTCAGTGAGTACACTGTGGTTGACATTGCCAATGTAACAAAGATTGACCCGGAAATTCCTCCTGACAGGGCATGTCTTCTCAGTTGTGGTGTATCAACAGGGGTAGGCGCTGCTTGGAGAACAGCAGATGTGGAGCCAGGGTCTACAGTAGCTATTTTTGGGCTGGGATCTGTTGGATTAGCAGTTGCAGAGGGAGCTAGACTTTGTGGAGCAACTAGGATTATAGGTGTGGATGTCAACCCAGAAAAATTTGAAATTGGGAAAAAGTTTGGACTCACAGACTTTGTCCATGCTGGAGATTGTGGGAACAAACCTATAAGCCAGGTTATAATAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCACTGGTACATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTTTAGGAGTGGACAAGCCAGGAGCCAGGTTGAGCCTCAGTTCTAGTGAGGTCCTTCATAATGGGAAGACCCTCATGGGATCCGTATTTGGAGGACTCAAACCCAAGTCTCATGTACCCATTCTCCTTAAACGCTACATGAACAAGGAACTACAGTTGGATGAATTTGTCACTCATGAGGTGGAGTTTAAGAACATCAATAAAGCTTTTGATTTATTGAGTCAAGGACAGTGGAGATCCAGCTTTTGTTCTTCACTTACTTGTTGCTTCACCATGGAACATAAACAAGTAGCAGCAACAACTGAAGGACAACCTATAAGATGTAAAGCGGCGGTTGCAAGAAGAGCCGGTGAACCATTGGTGATTGAGGAGATCATTGTGGCGCCACCAATGCCTCGTGAGATTCGGATTCGTATTATATGTACCTCCCTCTGCCACGTCGATATCACTTTTTGGAAGATGCAGGACCCTCCTGGCTTTTTCCCAAGAATTCTTGGTCATGAGTCAATTGGGGTAGTGGAAAGTGTAGGGAAGGATGTAACTGAAGTTACAAAAGGTGATGTGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTGTAGACTGCAAATCAACCAGGAGCAACCTTTGTTCTAATTTCCCTTTCGAGGCATCTCCGTGGTTGCCTAGACATAGTACCACTAGATTCACTGACCTAAATGGGGAGAGCATATACCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTGGACATTGCCAATGTAACAAAGATTGACCCAGAAATTCCTCCTAACAGAGCATGCCTGCTCAGTTGTGGTATAGCAGCAGGGATAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGGTCTTCAGTAGCTATTTTTGGGCTGGGATCTATTGGATTAGCGGTTGCTGAGGGAGCCAGACTTTGTGGCGCAACTAGGATTATAGGTGTAGATGTCAACCCAGAAAAATTTGAAATTGGAAAAAAGTTTGGAGTCACAGACTTCGTCCATGCTGGAGAATGTGGAAACAAACCTGTGAGCCAGGTTATCATAGAGATAACTGGTGGGGGAGCAGATTATTGCTTTGAATGCGTTGGTATGGCATCAATGGTCCATGAAGCATATGCTTCTTGTCGAAAGGGTTGGGGAAAAACTATTGTTTTAGGAAAGGACAAGCCAGGATCCAGTTTGAGCCTTAGTTCTAGTGAGGTCCTTCATGATGGAAAGACCCTCAAGGGAACCTTATTTGGAGGACTCAAACCTAAGTCTCATGTATCCTCTCTTCTCAAACGTTACATGGACAAGGAACTGCAGTTGGATAAATTTGTGACTCATGAGGTGCAGTTTAAGGACATCAATAAAGCTTTTGATTTATTGAGTAAAGGACAGTGTCTTCGGTGTGTAATTTGGATGGACAAATGA 2343 0.4434 MEHKVATASEGQPIRCKAAVARRAGEPLVMEEIIVAPPMPREVRIRIICTSLCHSDITLWKMKDPPGFFPRILGHEAVGVVESVGKDVTEVTKGDVVIPIFLPDCGECVDCKSTKSNRCTNFPFKVSPWMPRYGGTTRFTDLNGEIIYHFMFVSSFSEYTVVDIANVTKIDPEIPPDRACLLSCGVSTGVGAAWRTADVEPGSTVAIFGLGSVGLAVAEGARLCGATRIIGVDVNPEKFEIGKKFGLTDFVHAGDCGNKPISQVIIEITGGGADYCFECVGMASLVHEAYASCRKGWGKTIVLGVDKPGARLSLSSSEVLHNGKTLMGSVFGGLKPKSHVPILLKRYMNKELQLDEFVTHEVEFKNINKAFDLLSQGQWRSSFCSSLTCCFTMEHKQVAATTEGQPIRCKAAVARRAGEPLVIEEIIVAPPMPREIRIRIICTSLCHVDITFWKMQDPPGFFPRILGHESIGVVESVGKDVTEVTKGDVVIPIFLPDCGECVDCKSTRSNLCSNFPFEASPWLPRHSTTRFTDLNGESIYHFMFVSSFSEYTVVDIANVTKIDPEIPPNRACLLSCGIAAGIGAAWRTASVEPGSSVAIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKFEIGKKFGVTDFVHAGECGNKPVSQVIIEITGGGADYCFECVGMASMVHEAYASCRKGWGKTIVLGKDKPGSSLSLSSSEVLHDGKTLKGTLFGGLKPKSHVSSLLKRYMDKELQLDKFVTHEVQFKDINKAFDLLSKGQCLRCVIWMDK. 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03324 780 Gene3D - 581 721 - -
Seca6g03324 780 Gene3D - 189 329 - -
Seca6g03324 780 FunFam Alcohol dehydrogenase 6 19 201 - -
Seca6g03324 780 Gene3D - 19 378 - -
Seca6g03324 780 FunFam Alcohol dehydrogenase 6 412 593 - -
Seca6g03324 780 SUPERFAMILY GroES-like 402 588 IPR011032 -
Seca6g03324 780 Pfam Alcohol dehydrogenase GroES-like domain 434 561 IPR013154 -
Seca6g03324 780 Pfam Alcohol dehydrogenase GroES-like domain 41 169 IPR013154 -
Seca6g03324 780 SUPERFAMILY GroES-like 337 379 IPR011032 -
Seca6g03324 780 FunFam S-(hydroxymethyl)glutathione dehydrogenase 189 329 - -
Seca6g03324 780 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 174 350 IPR036291 -
Seca6g03324 780 SUPERFAMILY GroES-like 730 777 IPR011032 -
Seca6g03324 780 SUPERFAMILY GroES-like 9 198 IPR011032 -
Seca6g03324 780 FunFam S-(hydroxymethyl)glutathione dehydrogenase 581 721 - -
Seca6g03324 780 Gene3D - 412 773 - -
Seca6g03324 780 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 467 481 IPR002328 GO:0008270|GO:0016491
Seca6g03324 780 Pfam Zinc-binding dehydrogenase 605 725 IPR013149 -
Seca6g03324 780 Pfam Zinc-binding dehydrogenase 213 333 IPR013149 -
Seca6g03324 780 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Seca6g03324 780 PANTHER ALCOHOL DEHYDROGENASE 11 380 - -
Seca6g03324 780 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 566 741 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03324 Seca-Chr6 100228507 100238470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03324 434 512 Monolignol Biosynthesis Gene Families AT4G37990 30.000 2.11e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03324 K00121 - vvi:100255814 694.115