Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03312 ATGGATTCGTTTGAGGCAGATGGAAATGGGAAGGAGGAGTCATTGCCACCACCACCTCCAGTCCCTTCAGATGTTGTACCAGTCAAAGCTGAAGAGGCTTTCCCTGTCCCTGCTGAACCTGTTAAGAAAAAGGTTTCCCGTGTTCCAATAGCTAGACGTGGTTTGGGATCAAAAGGAACAAAAATACCTCTTCAAACCAATCACTTCAAAGTTAATGTCACTAACAATGATGGGCATTTCTTCCATTATAGTGTGTCTTTTTGTTATGAAGATGGACGCCCTGTAGAAGGTAAGGGTGTAGGGAGAAAGATAATGGATAGGGTGCAGGAGACCTATCATTCTGACTTGAATGGTAAGGACTTTGCATATGATGGTGAGAAGAGTCTGTTTACTATTGGCTCCCTTCCTCGAAACAAGCTTGAGTTTGAAGTTGTTCTGGAGGATTGGTTGTGTAACCTTTTATTTTCCTTCTTTTGTAGAAATAATGGCAATTGTAGCCCTGATGGAAATGGGGACAATGAGAGTGACAGAAAGAGGATGCGGCGACCATACCGTGCAAAGACATTTAAAGTTGAGATTAGCTATGCTGCAAAAATTCCAATGCAGGCCATTGCCAATGCCTTACGCGGGCAGGAATCTGAGAATTTCCAAGAAGCCATTAGAGTGCTTGATATCATATTGAGACAACATGCTGCTAAGCAAGGCTGCCTACTTGTGCGCCAATCTTTCTTCCACAATGATCCGAATAACTTTGCTGATGTTGGAGGTGGTGTTCTAGGCTGCAGAGGATTCCATTCAAGTTTTAGAACTACACAGAGTGGCCTGTCTCTCAACATAGATGTCTCAACTACCATGGTGATTCAACCTGGGCCTGTGGTGGACTTCTTAATTTCCAATCAAAATGTGAGAGATCCTTTTCAGCTTGACTGGGCAAAGGCCAAAAGGACACTGAAAAACCTGAGGATCAAAACTCACCCATCCAATCAAGAGTTCAAAATTACTGGACTCAGTGAACTCCCATGCAAAGAACAGACTTTTACTCTAAAGAGCAAAGGAAGGGATGGTGATGATAATGCTGAGGAAGTGACTGTATATGATTATTTTGTTAATGTTCGGAAGATAGATCTCCGTTACTCTGGTGATCTTCCATGTATCAATGTTGGCAAGCCTAAACGACCCACATATTTCCCTATTGAGCTTTGTGAATTGGTATCCTTGCAACGATACACAAAAGCTCTGTCCACACTTCAAAGGGCTTCATTAGTGGAGAAGTCCAGGCAGAAACCACAAGAGCGGATGAAAATTTTGTCTGATGCACTAAGAACCAGCAACTATGGTTCTGAACCTTTGCTTCGTAATTGTGGAATTTCTATAAGCAATGGCTTTACTCAAGTGGAGGGTCGTGTTTTGCCTGCTCCAAGGTTGAAGTTTGGCAATGGTGAGGATTTGAACCCAAGGAATGGGCGTTGGAATTTTGGCAACAAGAAATTTGTGCGGCCAACGAAGATAGAAAGATGGGCTGTGGTTAACTTCTCTGCACGCTGTGATGTACGAGGGCTTGTGAGGGATCTGACTAGAGTTGCAGATATGAAAGGAATTGCGATAGATCCCCCATTTGATGTGTTTGAAGAAAATGGTCAATTTAGGCGTGCTCCTCCTATGGTTAGAGTGGAGAAGATGTTTGAGCTCATCCAGTCTAAACTTCCTGGGGCACCTCAGTTCCTCCTCTGCTTGATTCCTGAACGCAAAAACTGTGAAATTTATGGTCCATGGAAAAAGAAGAATCTTGCTGACTTTGGAATCGTGAATCAGTGCATGTGTCCTTTAAGGGTCAATGACAATCTTCTGACCAATGTTTTGTTGAAGATCAATGCCAAGCTTGGTGGGTTGAATTCATTATTAGGCGTTGAAATTTCTCCATCTCTTCCTTTTGTTTCCAAAGCTCCGACCCTCATATTAGGCATGGATGTGTCACATGGCTCACCAGGGCAGACTGATATTCCTTCAATTGCTGCGGTGGTCAGCTCCAGAGAGTGGCCTCTGATTTCAAAATATAGAGCTTGTGTTCGTACTCAGTCTGCAAAGGTCGAAATGATAGATAATTTGTTCAAGCAAGTTTCAGAGAAGGAGGATGAAGGCATTATGAGGGAGCTTTTGATTGATTTCTATTCAAGTTCTGGGAAGAGAAAACCTGAAAATATAATCATATTCAGGGATGGTGTTAGTGAGTCACAGTTCAATCAAGTATTGAATATTGAACTTGATCAAATCATTCAGGCATGTAAATTTCTTGATGAAAAGTGGGAACCAAAATTTGTGGTAATTGTTGCTCAGAAGAACCATCACACAAGGTTCTTCCAGCCTGGATCTCCTGACAATGTCCCACCTGGTACTGTTATCGACAATAAAATTTGTCATCCCAGAAATTATGATTTCTACCTATGTGCACATGCTGGAATGATAGGTACCAGTAGGCCTACACACTACCATGTGCTACTGGATGAAGTTGGTTTCTCTCCTGATGAACTACAGGAGCTTGTCCATTCTCTATCTTATGTGTATCAGAGGAGTACCACTGCAATTTCTGTTGTTGCTCCAATATGCTATGCTCACTTGGCTGCAACACAATTGGGGCACTTCATGAAATTTGAGGACAAATCTGAGACATCTTCAAGCCATGGTGGGCTGAGTACTGCTGGAGCTGTTCCTGTGCCTCCGATGCCCAAATTGCAGGATAATGTCTGTAACTCAATGTTCTTTTGTTGA 2766 0.4262 MDSFEADGNGKEESLPPPPPVPSDVVPVKAEEAFPVPAEPVKKKVSRVPIARRGLGSKGTKIPLQTNHFKVNVTNNDGHFFHYSVSFCYEDGRPVEGKGVGRKIMDRVQETYHSDLNGKDFAYDGEKSLFTIGSLPRNKLEFEVVLEDWLCNLLFSFFCRNNGNCSPDGNGDNESDRKRMRRPYRAKTFKVEISYAAKIPMQAIANALRGQESENFQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPNNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMVIQPGPVVDFLISNQNVRDPFQLDWAKAKRTLKNLRIKTHPSNQEFKITGLSELPCKEQTFTLKSKGRDGDDNAEEVTVYDYFVNVRKIDLRYSGDLPCINVGKPKRPTYFPIELCELVSLQRYTKALSTLQRASLVEKSRQKPQERMKILSDALRTSNYGSEPLLRNCGISISNGFTQVEGRVLPAPRLKFGNGEDLNPRNGRWNFGNKKFVRPTKIERWAVVNFSARCDVRGLVRDLTRVADMKGIAIDPPFDVFEENGQFRRAPPMVRVEKMFELIQSKLPGAPQFLLCLIPERKNCEIYGPWKKKNLADFGIVNQCMCPLRVNDNLLTNVLLKINAKLGGLNSLLGVEISPSLPFVSKAPTLILGMDVSHGSPGQTDIPSIAAVVSSREWPLISKYRACVRTQSAKVEMIDNLFKQVSEKEDEGIMRELLIDFYSSSGKRKPENIIIFRDGVSESQFNQVLNIELDQIIQACKFLDEKWEPKFVVIVAQKNHHTRFFQPGSPDNVPPGTVIDNKICHPRNYDFYLCAHAGMIGTSRPTHYHVLLDEVGFSPDELQELVHSLSYVYQRSTTAISVVAPICYAHLAATQLGHFMKFEDKSETSSSHGGLSTAGAVPVPPMPKLQDNVCNSMFFC. 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03312 921 Gene3D paz domain 283 409 - -
Seca6g03312 921 Pfam Piwi domain 575 882 IPR003165 GO:0003676
Seca6g03312 921 Gene3D - 469 635 - -
Seca6g03312 921 Pfam Argonaute linker 2 domain 431 477 IPR032472 -
Seca6g03312 921 ProSiteProfiles PAZ domain profile. 331 405 IPR003100 GO:0005515
Seca6g03312 921 Gene3D - 641 921 IPR036397 GO:0003676
Seca6g03312 921 Pfam Mid domain of argonaute 484 536 IPR032473 -
Seca6g03312 921 Pfam PAZ domain 293 421 IPR003100 GO:0005515
Seca6g03312 921 CDD Piwi_ago-like 449 876 IPR045246 -
Seca6g03312 921 FunFam Protein argonaute 7 284 409 - -
Seca6g03312 921 SUPERFAMILY PAZ domain 284 445 IPR036085 GO:0005515
Seca6g03312 921 CDD PAZ_argonaute_like 289 404 - -
Seca6g03312 921 SMART Piwi_a_2 574 882 IPR003165 GO:0003676
Seca6g03312 921 MobiDBLite consensus disorder prediction 1 26 - -
Seca6g03312 921 Pfam Argonaute linker 1 domain 239 287 IPR014811 -
Seca6g03312 921 SMART DUF1785_2 237 289 IPR014811 -
Seca6g03312 921 SUPERFAMILY Ribonuclease H-like 558 880 IPR012337 -
Seca6g03312 921 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 43 884 - -
Seca6g03312 921 FunFam Protein argonaute 3 642 921 - -
Seca6g03312 921 ProSiteProfiles Piwi domain profile. 574 882 IPR003165 GO:0003676
Seca6g03312 921 Pfam N-terminal domain of argonaute 60 227 IPR032474 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03312 Seca-Chr6 100009158 100017757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03312 52 921 Eukaryotic Initiation Factors Gene Family AT5G43810 35.099 5.08e-169 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03312 K11593 - gmx:100820376 1640.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03312 6 100009158 100017757 Seca6g03312 6 100009158 100017757 ECH