Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03308 ATGGACGTCAATTATAGTGGGAACCTTCCAAATCTTGAATTGAACCCATATGCATGGACACACATGTTGAATATGATATACCTAGATATGCCAGTGGGCACGGGATTTTCTTACTCAGAAACGCAAGAAGGCTACTATAGCAATGACACATTGTGGGTAGAGCATACATATACATTTTTACAAAAGTGGTTCATTGATCATCCAAGGTTCAGCTCAAATCCATTTTATATTGGTGGCGGCTCATATACAGGATTAGTTACAGGTCCTGTAGTTCAAAAAGTATATGAAGGATACAAAGAAAAACGCTTGCCACGCATTAACATCAAAGGTTATGTGCTTGCAAGCCCAGCTGTTGACATAAATCGGGAATTGAACATGAGAGTTCTATTTGCATACCATATGACTCTTATACCAAAAGAACTCTATAAGTCGATGAAAGAAAATTGTAACGATAATTATATAACAATTGATCCAGAAAACACTAAGTGTGTCTCAGATTATGAAGCTTATTCTGAGCTAGTTCGCTATATAAACCGACAACAAATTATGGAGCCTCTTTGTATTACTACGCCTGGTGTGAATCAAGTAATTCAACAATCAGTTCAAGATAGTCCAGAATTTTGGTGTAGAAGCTATTATCACATCCTTATTGACACATGGGCAAATGATGAAAATGTGAGGAAGGCCCTTCAAGTAAGAGAGGGAAGTAAGGAGGAGTTCTTGAGATGCAACAAGACTTTGGCATACACCTCAACTAACCTCAATGTTGTAGAATATTATCGAAATCTCACTAATGCCAACATTGAAGCTCTCGTTTACTGTTCTGATCTTGATATGGATATACCTCAATTGGGTACAAAATATTGGATCAATTCATTGAATATGAGCATACATGATAAGTGGCGTGCATGGTTTGTGGAGGGTCAGGTGGCCGGATATACAGAAATTTACAAAACGAAAGAAGACCACTATTTCACATACGTGACTGTGAAGGGCGCTGGACATGTAGCCCAGACATTTAAACCCAAGGAAGTTTATCATATGATCATGAGGTGGTTTTCATTTTCACTTATCTAA 1077 0.3779 MDVNYSGNLPNLELNPYAWTHMLNMIYLDMPVGTGFSYSETQEGYYSNDTLWVEHTYTFLQKWFIDHPRFSSNPFYIGGGSYTGLVTGPVVQKVYEGYKEKRLPRINIKGYVLASPAVDINRELNMRVLFAYHMTLIPKELYKSMKENCNDNYITIDPENTKCVSDYEAYSELVRYINRQQIMEPLCITTPGVNQVIQQSVQDSPEFWCRSYYHILIDTWANDENVRKALQVREGSKEEFLRCNKTLAYTSTNLNVVEYYRNLTNANIEALVYCSDLDMDIPQLGTKYWINSLNMSIHDKWRAWFVEGQVAGYTEIYKTKEDHYFTYVTVKGAGHVAQTFKPKEVYHMIMRWFSFSLI. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03308 358 Gene3D alpha/beta hydrolase 1 356 IPR029058 -
Seca6g03308 358 Pfam Serine carboxypeptidase 9 353 IPR001563 GO:0004185|GO:0006508
Seca6g03308 358 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 10 342 IPR001563 GO:0004185|GO:0006508
Seca6g03308 358 SUPERFAMILY alpha/beta-Hydrolases 6 354 IPR029058 -
Seca6g03308 358 PRINTS Carboxypeptidase C serine protease (S10) family signature 15 27 IPR001563 GO:0004185|GO:0006508
Seca6g03308 358 PRINTS Carboxypeptidase C serine protease (S10) family signature 325 338 IPR001563 GO:0004185|GO:0006508
Seca6g03308 358 PRINTS Carboxypeptidase C serine protease (S10) family signature 63 88 IPR001563 GO:0004185|GO:0006508
Seca6g03308 358 PRINTS Carboxypeptidase C serine protease (S10) family signature 28 38 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03308 Seca-Chr6 99969627 99981112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03308 220 354 Calmodulin-binding Proteins AT2G22960 43.704 2.86e-34 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03308 K16296 - gmx:100798023 518.464