Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03306 ATGGGGATTCAGACAATGGGTTCTCAAGGTAATGGGCAACAGTCTCATTTACAACATTCTCCATTGTCTAGGCAAAGCTCTTGGTATAATCTCACCCTTGATGAGGTTAAGAGTCAATTAGGAGACATGGGGAAGCCATTAGGGAGCATGAACCTTGATGAGCTTCTTCAGAATGTGTGGACTGCTGAAGCAAATAAGCCTGTGCTAGGCATGGACAATGATGAAAACATGTCATCATCATCTTCCCTTCAACGCCAGGCCAGTCTCACATTGGCCCGTGCTTTGAGTGGGAAGACAGTTGATGATGTGTGGAGAGAGATTCAACAAGGTCAGAAGAAAAGGTATGGAGAGGGTGTGAAGAGCCATCAGGATAGAGAAATGAGTCTTGGTGAAACAACCTTAGAGGATTTCTTGGTGCAGGCAGGGCTTTTTGCTGAAGCTTCTAACAGTCCAGCTGTGGGGTATGATACAATGGAGTCCCCCACTCCCCAAAGTTTTCAACACAAAACAGGATTTACATCCTCCCCTTCAATTGGCAGCTTGTCGGACACAAGACCGGGCCGGAAAAGGGACTGTCCTGATGCATATGAGAAAACTCTGGAGAGGAGGCTGAAGAGGAAAATCAAGAATAGGGAATCAGCTGCTCGATCACGGGCCCGAAAACAGGTTGCTTACCATAATGAACTGGTTGGCAAGGTTTCCCGTCTAGAAGAAGAAAATATAAAGCTCAAGAAAGAGAAGGAATTTGAACAGAGGTTACCATTTGATCCATTGTCTGAACCAAAATATCAGCTTCGAAGAATAAATTCTGCCTCTTTCTGA 822 0.4513 MGIQTMGSQGNGQQSHLQHSPLSRQSSWYNLTLDEVKSQLGDMGKPLGSMNLDELLQNVWTAEANKPVLGMDNDENMSSSSSLQRQASLTLARALSGKTVDDVWREIQQGQKKRYGEGVKSHQDREMSLGETTLEDFLVQAGLFAEASNSPAVGYDTMESPTPQSFQHKTGFTSSPSIGSLSDTRPGRKRDCPDAYEKTLERRLKRKIKNRESAARSRARKQVAYHNELVGKVSRLEEENIKLKKEKEFEQRLPFDPLSEPKYQLRRINSASF. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03306 273 Pfam bZIP transcription factor 202 247 IPR004827 GO:0003700|GO:0006355
Seca6g03306 273 SUPERFAMILY Leucine zipper domain 202 251 IPR046347 GO:0003700|GO:0006355
Seca6g03306 273 SMART brlzneu 198 271 IPR004827 GO:0003700|GO:0006355
Seca6g03306 273 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 205 220 IPR004827 GO:0003700|GO:0006355
Seca6g03306 273 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 270 IPR043452 GO:0003700|GO:0045893
Seca6g03306 273 MobiDBLite consensus disorder prediction 160 193 - -
Seca6g03306 273 FunFam ABSCISIC ACID-INSENSITIVE 5-like protein 2 200 253 - -
Seca6g03306 273 Coils Coil 226 253 - -
Seca6g03306 273 MobiDBLite consensus disorder prediction 1 23 - -
Seca6g03306 273 Gene3D - 200 253 - -
Seca6g03306 273 MobiDBLite consensus disorder prediction 160 182 - -
Seca6g03306 273 CDD bZIP_plant_BZIP46 202 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03306 Seca-Chr6 99948309 99954589 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03306 22 273 bZIP Transcription Factor Family AT3G56850 47.735 1.58e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca6g03306 bZIP_1 5.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03306 K14432 - gmx:100798549 426.017