Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03298 ATGGGAAATTCCTGTGCAAAACCAGTTGCTCATGTGTCTTCCTCTAATATTGGTGGAAGTAAGAAGCCTCAAAGCAGGTCTCAAAGCAGGCCTCAAAGCAAGCCTCAAAGCAAGCCTCATAGCAAGCCCCAAAGCAAGCCAAAGCAGTATTCAAATTCTTCTCAACAAAAATCTACTTTGCATCCTTCAAGATTAAATGTTGACCAACCCATTTCCAATAAACTCAAGTCCTTCAGCTTGAATGATCTAAAGGAGGCCACTAAGAACTTCCGGCAAGAAAATTTAATTGGAGAGGGAGGATTTGGGCGTATCTTCAAGGGATGGATTGATGAGAACACATTTGCTCCCACAAAACCAGGGAGTGGGATAGTAGTGGCCATTAAGAGTCTTAAACCAGAAAGCTTTCAAGGCCACAAGGAATGGCTTGCAGAAATCAATTATCTAGGACAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTATTGCTTGGAAGGTAAAAACAGGCTTCTAGTCTATGAGTATATGCCAAAAGGAAGCTTGGAGAATCATTTATTCAGGAAAGGTGTTCAGCCAATTGCCTGGGTTACACGTGTCAACATTGCGATTGGTGTTGCAAGAGGATTAGATTTCTTACATTCCCTGCAAGCAAATGTTATATTTCGTGATTTAAAGGCTTCCAATATCCTACTTGATTCGGATTTCAATGCAAAGCTTTCAGATTTTGGGTTGGCAAGAGATGGTCCTACTGGAGATAATACTCACGTTTCAACTAGAGTTATTGGAACTCAAGGTTATGCTGCACCAGAGTATGTTGCTACAGGTCATTTGACACCAAGGAGTGATGTATACAGCTTTGGTGTTGTCTTGTTAGAGTTACTAACAGGAAGGCGTGCAGTAGAAGATGATAGACCAGGATTTTCAGAAGAAACACTAGTGGATTGGGCAAAGCCCTTTCTTAGTGATAACAGAAGAGTTTTGAGAATCATGGACACTAGGTTGGGTGGACAATACTCCAAGAAAGGAGCACAGGCTGCAGCTGCACTTGCATTGCAATGCCTTAACTCAGACCCCAAATTTAGACCACCTATGGCAGATGTTCTAGCAGCATTGGAAGGACTTCATTCCTTAAATACAATTCCAAGGACACCAAAATCTGGAACTGAGAGTCATGCAACAAAGCATTCTGGCTATTCACAAAAGTAA 1206 0.4163 MGNSCAKPVAHVSSSNIGGSKKPQSRSQSRPQSKPQSKPHSKPQSKPKQYSNSSQQKSTLHPSRLNVDQPISNKLKSFSLNDLKEATKNFRQENLIGEGGFGRIFKGWIDENTFAPTKPGSGIVVAIKSLKPESFQGHKEWLAEINYLGQLHHENLVKLIGYCLEGKNRLLVYEYMPKGSLENHLFRKGVQPIAWVTRVNIAIGVARGLDFLHSLQANVIFRDLKASNILLDSDFNAKLSDFGLARDGPTGDNTHVSTRVIGTQGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRAVEDDRPGFSEETLVDWAKPFLSDNRRVLRIMDTRLGGQYSKKGAQAAAALALQCLNSDPKFRPPMADVLAALEGLHSLNTIPRTPKSGTESHATKHSGYSQK. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03298 401 MobiDBLite consensus disorder prediction 1 68 - -
Seca6g03298 401 Gene3D Transferase(Phosphotransferase) domain 1 176 389 - -
Seca6g03298 401 MobiDBLite consensus disorder prediction 378 401 - -
Seca6g03298 401 ProSiteProfiles Protein kinase domain profile. 90 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03298 401 SMART serkin_6 90 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03298 401 Gene3D Phosphorylase Kinase; domain 1 65 175 - -
Seca6g03298 401 MobiDBLite consensus disorder prediction 379 401 - -
Seca6g03298 401 SUPERFAMILY Protein kinase-like (PK-like) 66 377 IPR011009 -
Seca6g03298 401 MobiDBLite consensus disorder prediction 8 68 - -
Seca6g03298 401 FunFam Serine/threonine-protein kinase BIK1 56 175 - -
Seca6g03298 401 CDD STKc_IRAK 96 374 - -
Seca6g03298 401 ProSitePatterns Protein kinases ATP-binding region signature. 96 128 IPR017441 GO:0005524
Seca6g03298 401 PANTHER OS01G0588500 PROTEIN-RELATED 45 375 - -
Seca6g03298 401 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 176 383 - -
Seca6g03298 401 Pfam Protein tyrosine and serine/threonine kinase 93 370 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03298 Seca-Chr6 99891280 99894525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03298 68 371 Glycoside Hydrolase AT3G07070 51.613 2.68e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca6g03298 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03298 - - gmx:100800654 600.127