Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03297 ATGTCATTGCAGTTTCCAATAACTGCTATACGTGAAATCAAAATTCTAAAGAAACTACACCATGAAAATGTGATCAAGTTGAAAGAAATTGTGACTTCTCCAGGCCCTGAGAAAGATGAACAAGGGAGGCCAGATGGAAACAAATATAAAGGCGGCATCTACATGGTCTTTGAATACATGGACCATGATTTGACTGGTCTTGCTGATCGACCTGGGATGAGATTTACAGTCCCTCAAATTAAGTGTTATATGAGGCAGCTTTTGACAGGGCTTCACTATTGTCATGTAAATCAAGTACTTCATCGTGATATAAAAGGCTCAAATCTTCTTATAGATAATGAAGGCAATCTGAAGCTTGCAGATTTTGGATTGGCACGATCATTTTCTAATGAGCACAATGCAAATCTTACAAATCGTGTCATCACCTTATGGTACAGACCCCCTGAGTTGCTGCTAGGGACAACAAGGTATGGGCCAGCTGTAGATATGTGGTCTGTTGGGTGCATTTTTGCTGAACTTCTTCATGGGAAGCCTATCTTTCCTGGAAAAGATGAGCCAGAACAATTAAACAAGATTTTTGAGCTGTGTGGAGCACCAGATGAGGCGAACTGGCCTGGTGTTTCACAGACTCCGTGGTATAATCAATTTAAGCCAACAAGACCAATGAAAAGGCGCCTGAGGGACGTTTTCAGACATTTTGATCGTCATGCTTTGGAATTGTTGGAGAAGATGCTGGCACTTGATCCTGCTCAGAGAATTACTGCCAAGGATGCACTTGATGCTGAGTATTTCTGGACTGATCCATTACCATGTGATCCCAAGAGTTTACCCAAGTATGAATCATCACATGAGTTTCAGACCAAGAAAAAGCGCCAGCAGCAAAGGCAAAATGAAGAAAATGCCAAGCGTCTTAAAATGCAGCATCCACAGCAGCATACTCGTCTTCCCCCTATTCAGCAGACTGGGCAACAACATGCCCAAATGCGGCAAGGTCCTAACCACCCGATTCAGGCCTCTCAACCAGCTGTTGCAGCAGGACCTAGCCATCATTATGGGAAGCCTCATCCCTCTGGTGGGCCAGGAAGATATCCTCCTGGTGGGGGGTACAATCACCCAAATCGTGGAGGTCAAGGAGGGGGTGGTGGTTATGGCAGTGGGCCATATCCTCCTCAAGGGAGGGGGGCACCTTATGGGTCTAGTAGTATGCCCGGTGGGCCTGGTGGTGGTCCTCGTGGTGGAGGTGGTAGTGGCTATGGAGTTGGAGCTCCAAATTATCCTCAAGGTGGTCCATATGGTGGGTCAGCAGCTGGTCGTGGCTCAAACATGATGGGTGGAAACCGTAACCAACAGTACGGTTGGCAGCAGTAA 1368 0.4642 MSLQFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGRPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFTVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNEHNANLTNRVITLWYRPPELLLGTTRYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEANWPGVSQTPWYNQFKPTRPMKRRLRDVFRHFDRHALELLEKMLALDPAQRITAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQNEENAKRLKMQHPQQHTRLPPIQQTGQQHAQMRQGPNHPIQASQPAVAAGPSHHYGKPHPSGGPGRYPPGGGYNHPNRGGQGGGGGYGSGPYPPQGRGAPYGSSSMPGGPGGGPRGGGGSGYGVGAPNYPQGGPYGGSAAGRGSNMMGGNRNQQYGWQQ. 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03297 455 Gene3D Phosphorylase Kinase; domain 1 2 61 - -
Seca6g03297 455 MobiDBLite consensus disorder prediction 277 306 - -
Seca6g03297 455 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Seca6g03297 455 Gene3D Transferase(Phosphotransferase) domain 1 62 304 - -
Seca6g03297 455 FunFam Cyclin-dependent kinase C-2 62 304 - -
Seca6g03297 455 MobiDBLite consensus disorder prediction 441 455 - -
Seca6g03297 455 MobiDBLite consensus disorder prediction 312 337 - -
Seca6g03297 455 PANTHER CELL DIVISION PROTEIN KINASE 4 270 - -
Seca6g03297 455 SUPERFAMILY Protein kinase-like (PK-like) 4 272 IPR011009 -
Seca6g03297 455 ProSiteProfiles Protein kinase domain profile. 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03297 455 MobiDBLite consensus disorder prediction 275 455 - -
Seca6g03297 455 Pfam Protein kinase domain 8 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03297 455 SMART serkin_6 1 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03297 455 CDD STKc_CDK9_like 5 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03297 Seca-Chr6 99887837 99891278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03297 5 455 Core Cell Cycle Gene Families AT5G10270 74.728 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Seca6g03297 Pkinase 1.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03297 K08819 - gmx:100793565 779.245