Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03293 ATGAGTGGTGAAAGAGGGGGTGATGGCCGCAAAATGTCCAAGCGTCGCCGGTCATCATTATCAGGTGAAGAAGCTGGTGGTGGAGATAACTTGGGAGGAGAAGGTCCTCTAAAGAAAGGCCCTGTTGAAGGTGACTTGGGAAGACAAGGTCATCTAAAGAAAGGCCCATGGACATCAGCCGAGGATGTAATTTTGATAGACTATGTTAATAAGCATGGAGAGGGAAATTGGAATGCAGTCCAAAAGTATTCAGGACTTGCCCGCTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAAACCAGATCTTAAAAAGGGTGCATTCACTCCAGAGGAAGAGAGCCGAATCATTGAGCTCCATGCTAATATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAACTATTGGAACACAAGACTTAAGAGAATGCAACGAGCTGGCTTACCAATCTACCCTGACGAAATATTCCAACGGGTGCTTAATGGCAATCAAGAAAGCCTAAATGCTGGCACCTTGACAAACGAAGCCAGTCAGCATGAAGATCTCTCACAAACAGATAGTTTTGATATACCTGATGTGGAATTCAGAAATTTCAAACTCCGCCGAGGTGTGTTATATGAACCATCAATTTTGGATATGCCTGAAAGCAGCATGCTTGAACAAAATTCAGACTCATCCCATAATTATAGTATGTGGTTGCCAATGATGCCACCCTTAAAGCGCCTCCAGGAGTCAGATATGCTATACAATAGTTTGGACAGTTGTATCAGTAGTGCTGTCCCAGTACTTGATCAGTATGGCAATTATACTTGTAAGAATATTTCTGACCATCCTAATTTGTCTTCTCCATGTGATCCCATTCTTAACACCAGCAAACAGTTTCATGGTGATGACCTCACTGGCAGCCATGCCACTTTAAATGGCAATACTTCTTCTTCTGCCCCCGTATCCGGGGTCATGGAGATGGAGCTCCCTTCACTCCAATATTCACAGACTCAACAAGGTAGCTGGACTGGTCCTGCATCCCCACTTCCTTCACCTGAGTCTGTTGATACATTGATTCAGTCTCCTCCAATTGAGCCCATTCAGTCAGATCCTGTTTCTCCACAGAGCAGTGGTTTGCTGGAAGCAATATTCTACAACTCAAAGAGTTTGCAAGGCTCAAATATTGGCTCACTGCAAGAGACAACTGATAATTGTGTGCCCACTGAAGCCATCAAGAGTTCAACTTTGATTCCCCATAAGACAGAACGCGATGAACTAGGGGAGCCAAATTCCCCCTTAGGTCAGTCTACTGCTTCAGTTGTGACTGACTATAATCCTTTTAGCACATATTCAGTGGATGGGCTCCAATCAGTGACAAAAACTCAGGATCATAATCATGAAGCAGTTACAGAGTTCCCAGCTTCCTATTCCAAGAAGAAAGAAATTTTGAATCAGATAGATTTTACTCGGCCTGACGCTTTGCTTGACTTGGGTTGGTTAGGGAACAGCACTGAGTATGGCAAGGATCAAATTCTTCTAAAAGATGCTCTAAATACATTTATTGAAGATTTCCATGTTTAG 1602 0.437 MSGERGGDGRKMSKRRRSSLSGEEAGGGDNLGGEGPLKKGPVEGDLGRQGHLKKGPWTSAEDVILIDYVNKHGEGNWNAVQKYSGLARCGKSCRLRWANHLKPDLKKGAFTPEEESRIIELHANMGNKWARMAAELPGRTDNEIKNYWNTRLKRMQRAGLPIYPDEIFQRVLNGNQESLNAGTLTNEASQHEDLSQTDSFDIPDVEFRNFKLRRGVLYEPSILDMPESSMLEQNSDSSHNYSMWLPMMPPLKRLQESDMLYNSLDSCISSAVPVLDQYGNYTCKNISDHPNLSSPCDPILNTSKQFHGDDLTGSHATLNGNTSSSAPVSGVMEMELPSLQYSQTQQGSWTGPASPLPSPESVDTLIQSPPIEPIQSDPVSPQSSGLLEAIFYNSKSLQGSNIGSLQETTDNCVPTEAIKSSTLIPHKTERDELGEPNSPLGQSTASVVTDYNPFSTYSVDGLQSVTKTQDHNHEAVTEFPASYSKKKEILNQIDFTRPDALLDLGWLGNSTEYGKDQILLKDALNTFIEDFHV. 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03293 533 Pfam Myb-like DNA-binding domain 107 150 IPR001005 -
Seca6g03293 533 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Seca6g03293 533 MobiDBLite consensus disorder prediction 341 361 - -
Seca6g03293 533 CDD SANT 56 101 IPR001005 -
Seca6g03293 533 MobiDBLite consensus disorder prediction 1 54 - -
Seca6g03293 533 MobiDBLite consensus disorder prediction 1 22 - -
Seca6g03293 533 SUPERFAMILY Homeodomain-like 52 148 IPR009057 -
Seca6g03293 533 Gene3D - 109 187 - -
Seca6g03293 533 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Seca6g03293 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Seca6g03293 533 SMART sant 106 154 IPR001005 -
Seca6g03293 533 SMART sant 53 103 IPR001005 -
Seca6g03293 533 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Seca6g03293 533 Gene3D - 53 106 - -
Seca6g03293 533 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 101 IPR017930 -
Seca6g03293 533 FunFam MYB-related transcription factor 53 106 - -
Seca6g03293 533 CDD SANT 109 152 IPR001005 -
Seca6g03293 533 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 518 - -
Seca6g03293 533 FunFam Transcription factor GAMYB 109 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03293 Seca-Chr6 99806765 99813806 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03293 50 530 MYB Transcription Factor Family AT5G06100 39.596 4.41e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g03293 Myb_DNA-binding 7.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03293 K09422 - gmx:100800658 687.182