Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03290 ATGGCCATTGAACCAAAGCGTGTGGTGGTGGTACAGGATGCATCTAAAGAACTAAATTTGAGAGTTTTTTATTGGATTGTAAATGGCTTGTCACTTAAATCAGCAGATATGGTCACCCTTCTTGCAATCCTGCATGAGGTTTACACTCCTATGGGATACAGAAGCACTGTGAACAACAGCTTAATACTCGGAGCAAACCAGAGGATCATTGATGAACAACTTGCAATGAAGAAGGGAGAGTATCTGCAGCATGAGGGCCTTGCTAGGGTTGCTAAACTGTATGAATCAAATAAGGTATCATTTAAGATACAGATATTTACAGGATCTTCACCGAAAGATGTCGCTCTAAAAGAATCCATAAACCTAAAGGCAACTTGGGTGATACTTGACAGGCAAATGAAGAAAGATGAAGAGTTTTTCCTGCAGAAGCTTTCTTGTGGTATATCTAGATTAAGGCGCAACAACCGGATAGTACGCTTAAGAGGACCTCTAGATCTTGCTGTTGAAATACAATGTAACAGCCATGAAACATTTGATGAAAGTTTACCAGAATGTCCTTATGAAGATCTTTTTGGTGATATTGTCCATGAGAGTCCAATCAAAGTTAACGGGGTGAACCAGATATACTGCAGGCAAGATGAGGAAGAGGGGTGCTCAACATTTATTACTAACGTTAATGAAAAACCATGTCAGACAAGTCCTGATCACCCTGCTATGGAAGAAACAGACATAAACACTAACCAAATGATAGGTAAGACAGAGGGAGATAAACAATGCCAGAATCAAGAACAGATACAAAGCATGCCTCTTGAGGATGAGAGTGACACAACACTTGTGATTAACAATGATCAAGCAACTACTCAAGAAATAACTGATCAACTCAGCCAGGATGTAGAAAAGATACACAACTTCTTCCATGATGAGGACTGGGACTTGAGGCATCCAACAAAGAGTAAAGAAATGATTGATCAAACAAAAGATGATCAACTGAGCCAGAATCAAGCACAACAGACACAAGGAATTTCCCATGGGGGTATATTGGATGGACATCAAGAGAAAAGCATTTTGGAAAATTCATTGTGCATTATGTGCTCAGTCTGCAAAAATAGAAGACTTAATATTGAATGGCAAAAGGAATTCACTTATGAGGAACTACAAGCAGCCACAGATGGATTTTCATTGAAAAATTGTCTCTCTGAATGTGGATATCCATTTTCAACTTGTAGAGGCCAGCTGGATGGAGAGATGAAAATAGTAGTTAAACAGCATGAAATAACAAATGCTCAAGTAAGGGAAAAAATCAAGTCAGAAGTCCAAACCATCCTCAAAGCTAGACACAAGAATGTGGTCATGCTATTGGGTTCAACTACAAAAGATCATTTCCTGTTGATTGTATATGAGTATGCATGCAATGGTTCACTTGACAAGTATCTATCAAGGGAAAGCTGCAGACCATTGACCTGGAGTGAAAGGCTGAGAGTGGCAATAGGTCTTGCCAGAGGTCTAAAGTACCTACATGACAATAACATTATCCATGGCAATATTAAACCAAGTAATATTCTTCTAACACATGACTTCAAACCACTGCTTGGAGATTTTGGCTTTGGGAAAAAACTTGAATTGATGTCCCACAAAAATAAAATTGGGAAATCTGAATACATAGCACCAGAGTATCAGGAGAAGGGGACACCATCAACTAAGACAGATGTATACTCATTTGGTGTGGTTATTTTAGAGTTGATCACTGGACACAAGGCTACAGATAAAATATCAGGAGAGAAAACCCTTGTTGGATGGGCAAAGCCTCTTCTTGGAGCAAAAAAGTATTCAGAGTTGGTGGATCCCATAGTCAGAAACTCATATGAAGATGACCAACTCCGTTGGCTGGTCCAAGTAACAGCACAATGTCTCAAAAAGAAGCCTAAGGAAAGATTATCCATGAATATGGTTGTTTCTGCATTACAAGGAATAGAAGATAGTGAACAATGCCACATTACAGAAGATATTACTTCAGCTACATCATCTTCAGGAATGGTGCCTGACATGAATGGTTCTCAAGTTCAGGCTACAAATACAATACAAGGCATAGCAGACAGAAAAAAATGCTATATGACAGAAGACTTTACTCTAGCTGTATCACATTCAAGATCTGTTCAAGACATAAATGGCTCACAAGGTCCAGAAGATCAACCAGGTCAGAATGAGGATCAGATAGAGAGCAGCTCCTTTGGGGAGGAAAGGAGTTTAAGGCTAAGAGTTGAAAATAATCACTTTTACATGATGAACCAGGGAAGCTCTGATACACTAGACCAGATTGAAGAACAGATGCATAGCAGACCCAAAGGGGTGGAGATGAGCTCAGGAAAGATGATAAGTGATCACATGATGGATCAGACAGTAGTTGATCAGCTGAGTGAGTTTGAAGAGCATATGAAGAGCACCCTCAATGGAGAGGGAATCTCAACACAGACAATTAGCATTAACCACATGATAGATCAGACAAAATTTGACCAGGTGAGCCAGGATCAAGAAGAGGAGAAGAGCTTTGTTCAAATGGAGAGAGCCTTAAGACCAGCACCTATGAGTGGAATGATAGATCAAATACAAATTCAGAGAAGCTCCCATGATAATTTATTGGATGGAAATCAAGGTGAAATCATTTTGGAGAATTCAAAATCCTCTGTATGCTCTATTTGCAAAAGTAAACGCCCAAGCATTGCATGGATGAAGGACTTTCTTTATGATGATCTCCTAGAAGCTACAGAAGGATTTTCAGTTAAGAATTCTCTATCTGAAAGTGAAGATGGACCTACTTTTAAAGGCCTTCTAGACAAAAAGGTGAAAATAGTTGTTAAGAAATATCAAATTACAAGGTCTGAGGAAGAGCAGATGTTGAAGTCAGAATTCCAGTTGCTCACCAATGTTAGGCATAAAAATGTGGTCTTGCTGTTGGGTTTATGTACAGACAAAAGTCAATTGATGATTGTGTATGAGCAAGTATGCAATGGTTCTCTTGATCATTACCTATCAAGGGGGAATTTCCAGTCATTGACCTGGAAGGAAAGGATGAAAGTAGCAGTAGGTACTGCCAGAGGTTTGAAATACCTACATGGGAATAACATAATTCATGGAAATATAAAATCAAGTAACATTCTTCTAACGCATGACTTTCAACCACTGATTGGAGACTTTGGCTTTGGAAAAATGAAACTTGAACCAAAGAAATCCTACAAAAATAAAAATGTAAGAGATTCTGGATATATAGCACCTGAGTATCTGGATAGTGGGAAACTATCAACTAAGGCAGATGTGTACTCCCTTGGAGTGGTTCTTTTAGAGCTGATCACTGGCCGGAGAGCCACAGACAAACTACCAGGAGGAAAAAGCCTTGTTGGATGGGCAAGGCCCCTACTGGGAGGAAAGAAGTACCTACAGTTAGTGGATCCAAAGATCAGTGACTCCTATGATGATGAACAACTTCTATGGCTGGTCCAAGTAACAGAACAATGTCTCAGAAAGAATTCTAAGGACAGATTTACAATGAATATGGTTGTATCTGCATTACAAGGCATAGCAGAATCAAATGAGTGTTGTGTGATTGAAGATTCTTCCCCAGAAAAGCCATATTTACCTCATGATGAGCCAGCTATGACTAGTTCACAAGGTAATTTAGGAAAACTACAACAAGAGGGGAGGAAGGGTGGACTTAACATTAACCAAATGATAGGCCAAATGAAGGCTGATCCGGTGAGCCGGGAACAAGGATGGATAGACAGAAACACAAATGAGGAGGAAAGAAGCTTCAGATTAGAAATTAAAACTGATCACATGATAGGTCAGAATAAAGATGATCAGCTGAAACAGGATGGAGAAGAGATGCAAAGCAGGCCTCATGGGGAGGAGATGTCCAGAGTGACAATTATAAGTAATCACATAGTTGAACAGATGAAACCTGATCAACAGATCCAGGAAAAACAGCATATTAAGGAAAATTTCCGCATAGATGAGATAGATAGAAAAGTAGATAACCAACAAAAGGTGAGCAAGGATGAAAAACAAATGCTAGGCAGGTGTGATGAGAGTTTATTGAATACAAATCAAGGCAAAATCATTTTGGAGAATTCAAAGCCTTCTTTATGCTCAATCTGCAAAATTAGACACCCAAATAATGGATGGGAAAAGACATTTACTTATGAAGAACTTCAATCTGCTACAGAAGGATTTTCAATTATGTATTCTCTATCTGAGGGTGAATATGGACCTGCTTTCAGAGGCCAGCTAGATAATAAGCTGAAAATAGTTGTTAAGAAACATGAATTCACAAGCTTGCAGGAGGAGAAGATGTTTATATCAGAAGTCCAGTTGCTAACAAATGCTAGACATGAAAATGTGATCATGCTGTTGGGTTCATGCATTCGAGAAAATCAATTGCTGACTGTTTATGAGCATGCATGCAATGGTTCACTTGACAAGTACTTATCAAGGGCAAGTGTTATATCATTGACTTGGAGAGAAAGGGTGAAAATTGCAGTAGGTGTCTCCAGAGGTCTAAAGTATCTACATGATAATCACATAATACATGGAAGAATAAAACCAAGTAACATTCTTCTAAATCATGAGTTTAATGCCATGATTGGAGATTTTGTGTTTGGAAAAGAAAGAAATGAATTCAAGAATAGCCTTAAAGATAAAAGCACACGGAATTGTGGATACACTGCACCAGAGTGTCAGGAGAGTGGAAAACTATCAACTAAGGCAGATGTGTACTCTTTTGGTGCTGTTCTTTTAGAGTTGATCACTGGCTGTATGATTTCAGAGAAGGTATCAAGAAGGAAATGTCTTATTGAATGGGCAAGGCCACTTCTTGGAGGAAGGAAGTATCTACAGTTGGTGGATCCCCAAATCAGCAGCTCCTGTGATGAACAAGAACTTACTTCATTGGTCCAAATAACAGAAAAGTGTCTTAGAAAGAATCCTAAGGAAAGGTTCACAATGAACATGGTTGTCTCTGCAATGCCATGTGTAGTTGATAGCAATGACATCTATGTGACTGAAGAATCTTCATCAGAAAAGTCATGTGTAGAATGCAGTGCTTCAGATGTTACAGGATCTAAAGTTGAGGAGGAATTACTGGAAGAAGAAGAAGAAGAAGATGATGATGATTTAGGCTCAGAGATTAGTGAAGAAAGAGATGAAAACATAACTTGTAGTAGAAGCAACAGTGTAACTGTAACAGACATGGGTCAAGAGAGGGATAACTACACAACATGTGGTGAAAGTTGTGAGGAAACACAAGAAAAAGAAAGCACAAGCACCAAGGTATGTCTAGAAAGGGAAAGGTGGGAATCTTATGGTGGAGCTAGAGACTTTTTTCTTGAAGGGGCTCAAGAGTATACAACTTCTAAACAGGCTTACAGGCCAGACCAGGCTTTTTCGCAGGCCAGACCAGACCTTACAAAAAGGCCTGTAACAGGTAACAGGCCAGACTCAGGCTTAAGAATTATGAGTCAGGCCAGGCTCAGGCCTGCCAAAGCCTGGCGCCTGGCCTACCAAAGCCTGGCCTGGCCTGGCCTGTTTCCACCCCTAAGCGTGTGCATAGGGATATGGAGGACTCATGGAAGTGGATCTGGCACCTGCACGTCCTGGAGAACCTAA 5655 0.3975 MAIEPKRVVVVQDASKELNLRVFYWIVNGLSLKSADMVTLLAILHEVYTPMGYRSTVNNSLILGANQRIIDEQLAMKKGEYLQHEGLARVAKLYESNKVSFKIQIFTGSSPKDVALKESINLKATWVILDRQMKKDEEFFLQKLSCGISRLRRNNRIVRLRGPLDLAVEIQCNSHETFDESLPECPYEDLFGDIVHESPIKVNGVNQIYCRQDEEEGCSTFITNVNEKPCQTSPDHPAMEETDINTNQMIGKTEGDKQCQNQEQIQSMPLEDESDTTLVINNDQATTQEITDQLSQDVEKIHNFFHDEDWDLRHPTKSKEMIDQTKDDQLSQNQAQQTQGISHGGILDGHQEKSILENSLCIMCSVCKNRRLNIEWQKEFTYEELQAATDGFSLKNCLSECGYPFSTCRGQLDGEMKIVVKQHEITNAQVREKIKSEVQTILKARHKNVVMLLGSTTKDHFLLIVYEYACNGSLDKYLSRESCRPLTWSERLRVAIGLARGLKYLHDNNIIHGNIKPSNILLTHDFKPLLGDFGFGKKLELMSHKNKIGKSEYIAPEYQEKGTPSTKTDVYSFGVVILELITGHKATDKISGEKTLVGWAKPLLGAKKYSELVDPIVRNSYEDDQLRWLVQVTAQCLKKKPKERLSMNMVVSALQGIEDSEQCHITEDITSATSSSGMVPDMNGSQVQATNTIQGIADRKKCYMTEDFTLAVSHSRSVQDINGSQGPEDQPGQNEDQIESSSFGEERSLRLRVENNHFYMMNQGSSDTLDQIEEQMHSRPKGVEMSSGKMISDHMMDQTVVDQLSEFEEHMKSTLNGEGISTQTISINHMIDQTKFDQVSQDQEEEKSFVQMERALRPAPMSGMIDQIQIQRSSHDNLLDGNQGEIILENSKSSVCSICKSKRPSIAWMKDFLYDDLLEATEGFSVKNSLSESEDGPTFKGLLDKKVKIVVKKYQITRSEEEQMLKSEFQLLTNVRHKNVVLLLGLCTDKSQLMIVYEQVCNGSLDHYLSRGNFQSLTWKERMKVAVGTARGLKYLHGNNIIHGNIKSSNILLTHDFQPLIGDFGFGKMKLEPKKSYKNKNVRDSGYIAPEYLDSGKLSTKADVYSLGVVLLELITGRRATDKLPGGKSLVGWARPLLGGKKYLQLVDPKISDSYDDEQLLWLVQVTEQCLRKNSKDRFTMNMVVSALQGIAESNECCVIEDSSPEKPYLPHDEPAMTSSQGNLGKLQQEGRKGGLNINQMIGQMKADPVSREQGWIDRNTNEEERSFRLEIKTDHMIGQNKDDQLKQDGEEMQSRPHGEEMSRVTIISNHIVEQMKPDQQIQEKQHIKENFRIDEIDRKVDNQQKVSKDEKQMLGRCDESLLNTNQGKIILENSKPSLCSICKIRHPNNGWEKTFTYEELQSATEGFSIMYSLSEGEYGPAFRGQLDNKLKIVVKKHEFTSLQEEKMFISEVQLLTNARHENVIMLLGSCIRENQLLTVYEHACNGSLDKYLSRASVISLTWRERVKIAVGVSRGLKYLHDNHIIHGRIKPSNILLNHEFNAMIGDFVFGKERNEFKNSLKDKSTRNCGYTAPECQESGKLSTKADVYSFGAVLLELITGCMISEKVSRRKCLIEWARPLLGGRKYLQLVDPQISSSCDEQELTSLVQITEKCLRKNPKERFTMNMVVSAMPCVVDSNDIYVTEESSSEKSCVECSASDVTGSKVEEELLEEEEEEDDDDLGSEISEERDENITCSRSNSVTVTDMGQERDNYTTCGESCEETQEKESTSTKVCLERERWESYGGARDFFLEGAQEYTTSKQAYRPDQAFSQARPDLTKRPVTGNRPDSGLRIMSQARLRPAKAWRLAYQSLAWPGLFPPLSVCIGIWRTHGSGSGTCTSWRT. 1885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03290 1884 FunFam Proline-rich receptor-like protein kinase PERK8 1370 1483 - -
Seca6g03290 1884 Pfam Protein tyrosine and serine/threonine kinase 413 654 IPR001245 GO:0004672|GO:0006468
Seca6g03290 1884 Pfam Protein tyrosine and serine/threonine kinase 1411 1671 IPR001245 GO:0004672|GO:0006468
Seca6g03290 1884 Pfam Protein tyrosine and serine/threonine kinase 928 1187 IPR001245 GO:0004672|GO:0006468
Seca6g03290 1884 SUPERFAMILY Protein kinase-like (PK-like) 907 1188 IPR011009 -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 717 745 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 1707 1727 - -
Seca6g03290 1884 PANTHER OS01G0253100 PROTEIN 848 1195 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 1736 1760 - -
Seca6g03290 1884 FunFam Proline-rich receptor-like protein kinase PERK8 886 999 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 717 739 - -
Seca6g03290 1884 SUPERFAMILY Protein kinase-like (PK-like) 376 654 IPR011009 -
Seca6g03290 1884 Gene3D Phosphorylase Kinase; domain 1 888 998 - -
Seca6g03290 1884 Gene3D Phosphorylase Kinase; domain 1 1374 1483 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 1704 1763 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 1207 1228 - -
Seca6g03290 1884 MobiDBLite consensus disorder prediction 1802 1830 - -
Seca6g03290 1884 ProSiteProfiles Protein kinase domain profile. 924 1210 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03290 1884 SUPERFAMILY Protein kinase-like (PK-like) 1391 1670 IPR011009 -
Seca6g03290 1884 ProSiteProfiles Protein kinase domain profile. 382 657 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03290 1884 Gene3D Transferase(Phosphotransferase) domain 1 1485 1699 - -
Seca6g03290 1884 Gene3D Transferase(Phosphotransferase) domain 1 470 677 - -
Seca6g03290 1884 Gene3D Transferase(Phosphotransferase) domain 1 1000 1206 - -
Seca6g03290 1884 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 469 667 - -
Seca6g03290 1884 ProSiteProfiles Protein kinase domain profile. 1408 1675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03290 1884 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1000 1199 - -
Seca6g03290 1884 Gene3D Phosphorylase Kinase; domain 1 367 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03290 Seca-Chr6 99623136 99635503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03290 380 660 Trihelix Transcription Factor Family AT5G38560 38.644 9.03e-54 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca6g03290 PK_Tyr_Ser-Thr 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03290 - - gsj:114401847 2168.66