Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03287 ATGGCTGTTACCTTCTCAAATCTCAACAACGACTCAGGCCTCAAATCCCTTGACGACTTCCTCTATGGGAAGGCCTACATTTCTGGGGATCGGTTCACAAAGGATGACATCAAAGTGTATGCTTATGTTTTGGAGAAGCCAGGTGGCACTTTTCCCAATGCTGCCAAGTGGTACGATGTTGTCTCTTCTCATCTTGCTGCAAGCTTCCCTGGCAATGCTCAAGGAGTAAGATTCAGTGCCAAAGCTGCTGCTCCTGCTGAGGCTGCTCCTGCAAAACCGGCTGCTTCTGCTGCTGCTGATGATGATGACCTTGACCTCTTTGGCGATGAGACAGAGGAGGACAAAAAGGCAGCTGAGGAAAGGGAGGCTGCTAAAAAGCCTGCCAAGAAGAAAGAGAGTGGCAAATCTTCTGTTCTGCTCGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCAGTTCGCAGCATTGAGATGCCTGGTCTATTGTGGGGAGCATGCAAACTGGTTCCTGTTGGTTATGGGATCAAGAAGTTGCAGATCATGTTAACCATTGTTGATGACCTTGTATCGGTGGACACCCTTATTGAGGAGCATCTCACAGTTGAGCCTTGCAACGAGTATATCCAAAGCTGCGACATTGTTGCATTCAACAAAATTTAA 675 0.477 MAVTFSNLNNDSGLKSLDDFLYGKAYISGDRFTKDDIKVYAYVLEKPGGTFPNAAKWYDVVSSHLAASFPGNAQGVRFSAKAAAPAEAAPAKPAASAAADDDDLDLFGDETEEDKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSIEMPGLLWGACKLVPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLTVEPCNEYIQSCDIVAFNKI. 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03287 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Seca6g03287 224 Gene3D - 128 224 IPR014717 -
Seca6g03287 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Seca6g03287 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 224 - -
Seca6g03287 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca6g03287 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Seca6g03287 224 FunFam Elongation factor 1-beta 1 like 129 224 - -
Seca6g03287 224 SUPERFAMILY GST C-terminal domain-like 9 66 IPR036282 -
Seca6g03287 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Seca6g03287 224 MobiDBLite consensus disorder prediction 112 132 - -
Seca6g03287 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03287 Seca-Chr6 99567956 99570873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03287 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 71.930 1.72e-104 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03287 K03232 - gmx:100306132 314.309