Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03286 ATGCAAAGTGGAGCAGCATACTGGTGTTATACATGCAGGCAGCCAATTTGGCTTGCAGGGACAGGGAGGGATGTCCTTTGCCCTTACTGTGATGGAGGTTTTGTGCAAGAACTTAATGAGATGCGAGGAATTGCAGCACCCCAACATGGCTTTTCATCACAGTTGGAAGAGTTTCATCAAATGCCTGATATTTTTGATGCTATACATGCTGTTGTAGGTCAAAGAGGTTCTGTACCAAGAATTGGGCTTAGAGATGCTGTTGATAACTATATGAGGCTGAGAATGGCTGGAAGGTACCCAAACTTTGATGTTAGAAGGAGGTCTGGTTCTACCCCAGTTCCTGAACAGGCTTGGGGCTTTTTTAGTTCTTCTGGTCCTTATTTGATATTTCATGGTCAAGCTCCTGGGTTCACCTTGTCTAATGGTAGCTCAAGAGGTGGTCATAGGCATGTTGATTTTGGTGGCTACTTTATGGGTCCTGGACTGGAAGAAATTGTTGAACAACTTGCTGTGAATGACCGGTTTGGTCCACCCCCTGCCTCGCGTTCTTCAATTGATGCAATGCCTACTATTAAGATCACACAGGCACATCTTTGTGCTGATTCACACTGTCCAGTTTGTAAAGAAAGATTTGATCTTGGTTCTGAGGCCAGGGAGATGCCTTGCAACCATATTTACCACTCTGATTGCATTGTTCCTTGGTTAGTTCAACATAACTCATGTCCTGTTTGCCGTGTTGAGCTGCCACCTCAAGGACATGCTAGTTCTCGTGGTAGACGAAGTTGGGGAGGAAGAAGGAATGCCAACAGCAGTGGTGGCAATGATATCTCCAGAAGCAGCAGGGATAATAGTCAGCTGAACAATGGAAGAAGAAATCCACTATCATTTTTGTGGCCATTCCGTTCTTCCAGTTCAAATACTAATTAA 927 0.4466 MQSGAAYWCYTCRQPIWLAGTGRDVLCPYCDGGFVQELNEMRGIAAPQHGFSSQLEEFHQMPDIFDAIHAVVGQRGSVPRIGLRDAVDNYMRLRMAGRYPNFDVRRRSGSTPVPEQAWGFFSSSGPYLIFHGQAPGFTLSNGSSRGGHRHVDFGGYFMGPGLEEIVEQLAVNDRFGPPPASRSSIDAMPTIKITQAHLCADSHCPVCKERFDLGSEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGHASSRGRRSWGGRRNANSSGGNDISRSSRDNSQLNNGRRNPLSFLWPFRSSSSNTN. 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03286 308 SMART ring_2 204 244 IPR001841 -
Seca6g03286 308 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Seca6g03286 308 MobiDBLite consensus disorder prediction 251 290 - -
Seca6g03286 308 FunFam E3 ubiquitin-protein ligase RING1-like 168 251 - -
Seca6g03286 308 Pfam Ring finger domain 203 245 IPR001841 -
Seca6g03286 308 ProSiteProfiles Zinc finger RING-type profile. 204 245 IPR001841 -
Seca6g03286 308 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 143 249 - -
Seca6g03286 308 SUPERFAMILY RING/U-box 184 251 - -
Seca6g03286 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 251 IPR013083 -
Seca6g03286 308 CDD RING-H2_RNF126-like 204 245 - -
Seca6g03286 308 MobiDBLite consensus disorder prediction 262 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03286 Seca-Chr6 99544503 99545429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03286 151 260 C3H Transcription Factor Family AT5G01980 42.857 1.74e-25 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03286 K11982 - ccaj:109790507 474.552