Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03251 ATGGCTTTCACACTAGACAGGTGTGAGGAGAATATGGTGTTCACTTTTGAGTCTCAGAAGTCAGTGCCAGCACCCTTCCTGACAAAGACATACCAGCTTGTTGATGACCCTAGGACTGATCACATTGTGTCTTGGGGTGAAGATGAAACTACATTTGTTGTATGGAGACCCCCTGAGTTTGCTAGAGATCTTCTTCCAAACTATTTCAAACATAACAACTTCTCAAGTTTTGTTAGGCAACTCAATACCTATGGTTTCAAGAAGGTAGTTGCTGATAGGTGGGAGTTTGCAAATGAGTTTTTCAGAAAAGGAGCTAAGCACCTTTTATGTGAAATCCATAGGAGAAGAACACCTCAGCACAATCACCAACTCTACCATGATCAACCACCACAGATTCTTCAGAAAGATGAAAATCTATGTTGGCTTGACAATACTCCATCATTACCTTCTCCTAAATCAAGCACAGCTGATATTTTAACAGCACTTTCAGAAGATAACCAAAGACTAAGGAGAAAGAACATTATGCTCTTATCAGAGCTAAGTCACATGAAGAATCTATACAATGACATTATATATTTCATCCAAAACCATGTCAAACCAGCACCCTTAGAACAAAGAAGCAGCAGTGCTATTCCAAAGCTGGTGGAATTGGATTCATTGCCTGATTCTCCAACTGATATGGGAGTCAGAACTGCAAAGAGTCATATTATAGAGAAGTCTTTGATAAATTCTATTGAGGAATCAAATAGTTCTGTAAAACTCTTTGGGGTCCCTCTAAGTGGCAAAAAAAGATTGCACCCAGATAACATGAATTGA 816 0.3909 MAFTLDRCEENMVFTFESQKSVPAPFLTKTYQLVDDPRTDHIVSWGEDETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEFFRKGAKHLLCEIHRRRTPQHNHQLYHDQPPQILQKDENLCWLDNTPSLPSPKSSTADILTALSEDNQRLRRKNIMLLSELSHMKNLYNDIIYFIQNHVKPAPLEQRSSSAIPKLVELDSLPDSPTDMGVRTAKSHIIEKSLINSIEESNSSVKLFGVPLSGKKRLHPDNMN. 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03251 271 Gene3D - 18 116 IPR036388 -
Seca6g03251 271 FunFam Heat stress transcription factor B-4 18 116 - -
Seca6g03251 271 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 207 IPR027725 -
Seca6g03251 271 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g03251 271 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g03251 271 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g03251 271 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g03251 271 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Seca6g03251 271 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g03251 271 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03251 Seca-Chr6 99217790 99219359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03251 10 266 HSF AT1G46264 51.456 3.05e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca6g03251 HSF_DNA-bind 1.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03251 K09419 - gmx:100806150 455.677