Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03248 ATGATGGAAGGAGAGAGTTCAAGTAAGAAGAGGGCAAGCTACAATGACTATGGCTTCATGGATTTGATTTTCTCTTGGTCCATTGAAGACATTTTAAATGAAGAACTATACAAGAAAGAGGTAACGAAGATTAAGCTTTCATTTGAGTCCATAAGTCATTATGTTGGATCTTTTAAGTACCCTTTGTTGGAAGAAACTCGAGCACAACTATGTTCTAGTATGGATCTCATATACCAAGCACCTTTTGCTGAAGTGATTGGTGTTCAGATGGCAAGACCATTTGAACAAAAACTGTATCATTTGAAAACTGGTAGTTGGAAGAACAGGTTTACTCATCGTGGAGAGCCATATAAAATGTTGCCTGGAGACTTGCTAATTTTGGCAGATTATAAACCTGAGTCTGTAAAAGATCTGCAGAGATTTGGAAGAATGTGGAGTTTTGTAGTAGTTGTAAAGACAATTGAAGATGATAATGAAGGTGATAGCATGTCTGCCTATTTTAAAGTTAAGGCATCAAAAGATATTGACCAGAAGAAATCTCTATTCCTTGTTTTCATTACAAATGTAATTTCTAATGGAAGAATTTGGAACGCACTACACATGACTGGCAATTTAAAGCTGGTCAAGCAAATCTTATGCAACAATGATGGGTTTAAGGAAAGTTGTAGTTGTGGCTCTCTTGCTGATGCTTCATGGGATGACTCTTCATATGGAAGGTTATCATCAGAGCTTAATGAATCTCAGGATAAGGCCATTCGTGCATGTCTTTCTGGCCTTAATTGCAATCACAATGACAACTCTACTGTGAAGCTTATTTGGGGTCCACCAGGAACAGGAAAGACTAAAGCTTTGGCAACACTTCTTTGTGCTCTATTGAAAATGAAATTTAGAATCCTTGTTTGTGCTCCTACAAATGTTGCTATCAAAGAAGTGGCTTCACGTGTATTGAGCATTGTGAGAGAGTCACTTTGTAGCCAATCAGGGTATTTGTTCTGTTCAACTGGAGACCTGCTATTGTTTGGGAATAATGAAAGGCTCAATGTTGGTTCAGATATTGAAGATATATATTTGGATTATCGAATGCAACAGCTTACACAATGTTTTGCATCTTTTACTGGTTGGAGTTCTTGTCTTGGATCAATGATTGATCTTCTTAAGAATTGTGTTTTCCATTATCATATGTTCATTGGGAATGGGTTGGTAAGCTCATATAGTAGCATAAATAAGTCCAAATCATTTCTAAAGTTCATGAGAGAAAGGTTTCTTTCTGCTGTATTGCCACTCAAATCATGTATTTCTGTCTTATGTACACATGTAGGCATGTGTCTCATGTTGGAACATAACTATCAGAACTTAGTGTGCTTAAATGAAGCACTTGAATCATTTCAAGAAGTGTTGTTTCAGAATAATTTGCTTTCTGAAGGATTGGAAAAGCTTTTCTCTAATCTTGAAATACCAGAGAATTCTTCTTGGTCATATAATGATGCTGCATACCAATTGTACAAGAAGAGAAATGAATGTCTATCTGCTTTAGTAACTGCAAAAGATTCTCTTGATAGACTTGGGTTGATAAAATCTTTGAAGAAAGAATCAATTAGAGAGTTTTGTTTCCAAGCATCATCAATAATATTTTCCACAACTTCTGGTTCCTATAAGCTACACTCAATTGACATGAAGCCACTGAACCTTTTGGTGATAGATGAAGCTTCACAATTGAAAGAGTGTGAATCAATAATATCTCTACTACTTCCAGGAATAAGCCATGCCATTCTTGCTGGTGATGAGTGTCAATTACCTTCAATGGTTAGAAGTAATGTTTCTTCTGAAGCTGGTTTTGGGAGAAGCCTATATGAGAGACTGAGCTTATTGAATCATCCAAAGCAACTTCTCAACATGCAGCATAGGATGCATCCTGAAATAAGTTTATTTCCAAATAAATATTTCTATTCTAATAAAATTCATGATGCACCAAATGTCAAAAGTAACTACAGGAAGCAATACCTTCTGGGGCCAATGTTTGGTACATATTCTTTTATTAATATAATTGGGGGCAGAGAAGATTTTGATGATGAAGGAAGAAGCTATAAAAATATGGCTGAGGTAGCAGTCATTGTCACATTAGTGAAGAATTTGCACAAAGAATGGCTTGCCTCAAAGAAGAAACTCTCCATTGGCATAGTGTCTCCCTATGCTGGTCAAGTTATCACAATTCAAGAGAAACTTGGACATATTTATGATAGCTATGATGGATTTAATGTGAATGTTAAATCAATTGATGGTTTTCAGGGTGGTGAACAAGATGTTATTATATTATCAACTGTAAGAACCAATTACAGGAGTTCTCTTGAGTTCATTTCCTCTCCCCAGAGGACTAATGTTGCTCTTACAAGGGCAAGGCATTGTTTGTGGAGTCTGGGGAATGAAATGGCTCTGTCAAACCGTGACAATGTTTGGAAGGCTTTGATTCTTGATGTGAAGAATCGTAAATGTTTCTTTAATGCGGATGAAGACAAGGAATTGGCAAAAGCTATCTTAGATGCCAAGAAAGAGATGGATCAATCAGTTGATTTGCTTGATGCAAATAGTGTTCTTTTCAGAAATGCTAGATGGAAGGTCCACTTCAGTGACAAATTCTTCAGATCATTCAAAAGGCTGCGGACAGAACAGAGGAAAAATATGGTTATAGAGGTTCTAAAGAAACTTTCTAATGGGTGGAGACCAAAAAGGACAACTACAGAATTGCATTATGAAAATTCATCACAGATTTTGAAACAATTTAAGGTTGAAAGTCGCTATATTATTTGTTCAATCGAGATAGTTAAAGAGTCTAGGAAGTATATTCAGGTTTTGAAGATATGGGACATATTGCCTCTAGAGGATATCCCACAATTGGCCAAGCGCCTTGATAACACATTCAGAAGATACACTGATGAATATATCATTCAATGCAAACAGAAACGTTTTGAGGGAAACAATGAGTTTCCTTTGAGTTGGCCTATCTCTTCAAATATCCAAAAATTTAAGAGTGTTGATAATACAAATGAGGGAGTTTTAGATAATTCTGAAGATAGAATTGATGCTGAAAACTCAAAAGAAGTGGATCTGCCATTTGAGGTAACTAATGAACAGCATGATATAATTCTCTTCCCTCAAAGTACATTTGTACTTGGACGGTCTGGCACTGGCAAAACAACTGTTCTGACCACTAAGCTTATTCGAAATGAGAAATTGCACCATCTAGCAGTTGAAGAAGTATATGGATCCAATTATTGTGCAAGTGAGAGACCAGTCTTAAGACAGTTATTTGTCACATTGAATTCTGGACTGTGTCAACAGGTCAAACATCATGTTTCTTGTTTGAAAAGGTCACTTTGTAAAGGAAGCATGTTAGCTGAAAAAAATTCAATTGATGAAGATATTGGTGATGTTACAGATTCCTTTTCTGATCTTCCATGCAATTTATATCCCCTTGTGATAACATTTCGTAAATTTTTGCTGATGCTTGATGGGACAATTGGAAATTCTTATTTTGAGAGATTTCATGATCTCAAGGGTCAGAACCTTGGTAAGAAGTTAGTTGCATTGGAAACCTTCAAAATGAAGAAGGAGGTGAACTTTGAAAGGTTTGATTCATTATATTGGCCTCATTTTAATTCCAAGTTAAGTAAGAAGTTGGATTCTTATCAAGTGTTCACTGAAATAATGTCACACATAAAAGGTGGCACAAAATCTGTTGAGCATGGTAAGTTAAGCCGTGAGGAATATTGTACTTTATCTGAAAGCCGAGCATCAAGTTTGAGCATGCAAACAAGAGAAATGATCTATGATATCTTTCAAGATTATGAAAAAATGAAGATGGAAAATGGTGAATTTGATTTGGCTGATGTTGTAATTGATCTACACAGTAGACTGAGAACTGAAAGATACAAGGGTGATGAAATGAACTTTGTGTTTATTGATGAAGTGCAAGATCTTACAATGGCTCAAATTGCTTTGTTTAAACACATATGCAGAAATGTAGAAGAGGGTTTTGTTTTCTGTGGGGATACAGCACAGACCATTGGAAGGGGTATTGACTTTAGATTCCAAGATGTGAGATCCCTCTTCTACAAGAAGTTTGTGTTAGAAAATTACAAGAATTGGAATCATGACAAAAGAAAGGACAAAGGGCATATTAGTGGTATTTTCATGTTGAGTCAGAACTTCCGCAGTCATGCTGAGGTAGAAACTAGTTTGATATATGGAGAAGCCCCAGTTGTGATAGAATCTAGTAGTACAGAAAATCCACTTGTAACTATTTTTGGAGGACTTGGGAATATTGGAGGATTTGCGGCAGATCAAATAATCTTAGTTCGAGATGATTCTGCTAGGGAAGAAGTCATGCATATTGTAGGAAAACAAGCTCTTGTTTTAACCATTTTAGAGTGCAAGGGCCTTGAGTTTCAGGATGTATTGCTGTACAACTTTTTTGCCTCTTCACCTCTGAAAAGGAGATGGTGTGTAATATATGAGTATATGAAGGAAAAAAATATGTTGGACTCAAAAGCACACATTAACAATCGAAGCTTTTTTGATTCCAAGCACAATGTTTTGTGCTCTGAACTCAAGCAATTATATGTGGCTTTAACACGTACAAGGAAGAGGTTGTGGATTTGTGAGGGTCTAGAAGAGTTCTCTAGACCAATGTTCAACTTTTGGAAGAAGAAAAATCTTGTTCAATTTGAAATACTAAGTAGTTCACTTGTTGAGACAATGAAGAGTGCAAGTAGGAGTGAAGAATGGAGGTCAAGGGGAATTCAGATGTATCATCAAAATAACTTTGACATGGCAACCATGTGTTTTGAAAGAGCTGGGGATTCTCAGTGGTTGGAAAAGTCTAAGCCTGCGGGTCCTAGAGCAAAAACTAATATCATAGAAATTGGTGTTGCATTTTTCATCTTCTTCATCTCACACTTCTCCATTCACTTAATTCTTAGAAGCAATTCTAAAAATCTCCCACCAGGCCCAAGAGGATGGCCAATTCTTGGTGCTCTACCACTCTTAGGAACCATGCCTCATGTCACACTCACAAACATGGCTAAGAAATTTGGACCCATCATGTTCCTAAAAATGGGCACTTGTGACACTGTGGTTGTTTCAAGCCCAGATTCAGCCAGAGTTTTCCTCAAGACCTTAAACCAAAACTTCTCAAATAGACCCACAATTGCTGGTGCAACCCATTTGGGGTATAACTCACAGGACCTAGTTTTTGCAGAATATGGGCCTAAATGGAAGCTGCTTAGGAAACTAACTAGCCTACACATGCTTGGTGGGAAGGCCCTTCAGGATTGGGCTCATGTGAGAGCAAGTGAGGTAAGACACATGGTGTGGGCCATACATGATGAGTGTGGCAAAGGGGAACCAATAGAGGTGGGTGATTTTTTGAGTTGTGCAATAACAAATATGGTAAGCCAAGTGGTACTAAGCCACCGTATATTTGCAAACAAAGGGTCAGAGTCTAAGGAGTTTAAGGACATGGTGGTGAAATTCATGACAATATCTGGGGTGAATATTGGTGATTTTGTACCTTGCATTGGTTGGATGGACTTGCAAGGTGTAGTGGGTAAGATGAAACGCTTACATAAGAGATTTGATGTGTTTTTTAATAAGATGATTGATGAACATGTGAAGTCTACTCATGAGCGTAAGGGGAAGCCAGATTTTCTAGATATTGTGATGATGACAAATGGTGAAGATGAAGATCCATCTGGGGAGAGACTGAGTTTGTCTAACATTAAGGCTCTACTATTGGTACCTATCCCTTTCATCCAATTTCCACGCACAGACACATCATCTAGTATCATAGAATGGGCACTAGCTGAAATGTTGAAAAGCCCAAACATCCTCATAAGGGCACAAAAAGAGATGGACCAAGTAGTGGGAAGGCAAAGATTGCTTATTGAATCAGACCTACCTAAATTACCATACCTCCGAGCAATCTGCAAAGAAACATACCGTATGCATCCATCTACACCCCTTAGTGTTCCTAGGGTGTCAACTGAAGCATGCCAAGTCAATGGCCACTACATCCCCAAGAATACCAGATTAAATGTGAATGTATGGGCCATAGGGAGAGACCCCAATGTGTGGCCCAACCCATTAGAGTTCAATCCAGAGAGATTTCTTAATGGGAAGCATGCAAAAATTGATCCTAGTGGAATTGATTTTGAGTTGATTCCCTTTGGAGCTGGAAGGAGGATTTGTGCAGGGTATAGAATGGCAATTGTAGTGATTGAGTACATTTTGGGCATTTTAGTACATTCTTTTGACTGGAAGTTATCAAATGGAGCAGAGCTAAACATGGATGAGGCCTTTGGACTTACTTTGCAAAAGGCAGTGCCTTTGTCAACTATAGTTAGCCCTAGATTGGTCCCAGATGCTTATGTTTGA 6429 0.3766 MMEGESSSKKRASYNDYGFMDLIFSWSIEDILNEELYKKEVTKIKLSFESISHYVGSFKYPLLEETRAQLCSSMDLIYQAPFAEVIGVQMARPFEQKLYHLKTGSWKNRFTHRGEPYKMLPGDLLILADYKPESVKDLQRFGRMWSFVVVVKTIEDDNEGDSMSAYFKVKASKDIDQKKSLFLVFITNVISNGRIWNALHMTGNLKLVKQILCNNDGFKESCSCGSLADASWDDSSYGRLSSELNESQDKAIRACLSGLNCNHNDNSTVKLIWGPPGTGKTKALATLLCALLKMKFRILVCAPTNVAIKEVASRVLSIVRESLCSQSGYLFCSTGDLLLFGNNERLNVGSDIEDIYLDYRMQQLTQCFASFTGWSSCLGSMIDLLKNCVFHYHMFIGNGLVSSYSSINKSKSFLKFMRERFLSAVLPLKSCISVLCTHVGMCLMLEHNYQNLVCLNEALESFQEVLFQNNLLSEGLEKLFSNLEIPENSSWSYNDAAYQLYKKRNECLSALVTAKDSLDRLGLIKSLKKESIREFCFQASSIIFSTTSGSYKLHSIDMKPLNLLVIDEASQLKECESIISLLLPGISHAILAGDECQLPSMVRSNVSSEAGFGRSLYERLSLLNHPKQLLNMQHRMHPEISLFPNKYFYSNKIHDAPNVKSNYRKQYLLGPMFGTYSFINIIGGREDFDDEGRSYKNMAEVAVIVTLVKNLHKEWLASKKKLSIGIVSPYAGQVITIQEKLGHIYDSYDGFNVNVKSIDGFQGGEQDVIILSTVRTNYRSSLEFISSPQRTNVALTRARHCLWSLGNEMALSNRDNVWKALILDVKNRKCFFNADEDKELAKAILDAKKEMDQSVDLLDANSVLFRNARWKVHFSDKFFRSFKRLRTEQRKNMVIEVLKKLSNGWRPKRTTTELHYENSSQILKQFKVESRYIICSIEIVKESRKYIQVLKIWDILPLEDIPQLAKRLDNTFRRYTDEYIIQCKQKRFEGNNEFPLSWPISSNIQKFKSVDNTNEGVLDNSEDRIDAENSKEVDLPFEVTNEQHDIILFPQSTFVLGRSGTGKTTVLTTKLIRNEKLHHLAVEEVYGSNYCASERPVLRQLFVTLNSGLCQQVKHHVSCLKRSLCKGSMLAEKNSIDEDIGDVTDSFSDLPCNLYPLVITFRKFLLMLDGTIGNSYFERFHDLKGQNLGKKLVALETFKMKKEVNFERFDSLYWPHFNSKLSKKLDSYQVFTEIMSHIKGGTKSVEHGKLSREEYCTLSESRASSLSMQTREMIYDIFQDYEKMKMENGEFDLADVVIDLHSRLRTERYKGDEMNFVFIDEVQDLTMAQIALFKHICRNVEEGFVFCGDTAQTIGRGIDFRFQDVRSLFYKKFVLENYKNWNHDKRKDKGHISGIFMLSQNFRSHAEVETSLIYGEAPVVIESSSTENPLVTIFGGLGNIGGFAADQIILVRDDSAREEVMHIVGKQALVLTILECKGLEFQDVLLYNFFASSPLKRRWCVIYEYMKEKNMLDSKAHINNRSFFDSKHNVLCSELKQLYVALTRTRKRLWICEGLEEFSRPMFNFWKKKNLVQFEILSSSLVETMKSASRSEEWRSRGIQMYHQNNFDMATMCFERAGDSQWLEKSKPAGPRAKTNIIEIGVAFFIFFISHFSIHLILRSNSKNLPPGPRGWPILGALPLLGTMPHVTLTNMAKKFGPIMFLKMGTCDTVVVSSPDSARVFLKTLNQNFSNRPTIAGATHLGYNSQDLVFAEYGPKWKLLRKLTSLHMLGGKALQDWAHVRASEVRHMVWAIHDECGKGEPIEVGDFLSCAITNMVSQVVLSHRIFANKGSESKEFKDMVVKFMTISGVNIGDFVPCIGWMDLQGVVGKMKRLHKRFDVFFNKMIDEHVKSTHERKGKPDFLDIVMMTNGEDEDPSGERLSLSNIKALLLVPIPFIQFPRTDTSSSIIEWALAEMLKSPNILIRAQKEMDQVVGRQRLLIESDLPKLPYLRAICKETYRMHPSTPLSVPRVSTEACQVNGHYIPKNTRLNVNVWAIGRDPNVWPNPLEFNPERFLNGKHAKIDPSGIDFELIPFGAGRRICAGYRMAIVVIEYILGILVHSFDWKLSNGAELNMDEAFGLTLQKAVPLSTIVSPRLVPDAYV. 2143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03248 2142 Gene3D - 1373 1575 IPR027417 -
Seca6g03248 2142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1036 1553 IPR027417 -
Seca6g03248 2142 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 2074 2083 IPR017972 GO:0005506|GO:0016705
Seca6g03248 2142 Pfam UvrD/REP helicase N-terminal domain 1235 1354 IPR014016 GO:0005524
Seca6g03248 2142 ProSiteProfiles UvrD-like DNA helicase ATP-binding domain profile. 1036 1405 IPR014016 GO:0005524
Seca6g03248 2142 Gene3D - 1043 1372 IPR027417 -
Seca6g03248 2142 Pfam Cytochrome P450 1666 2122 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 Pfam AAA domain 244 604 IPR041677 GO:0004386
Seca6g03248 2142 FunFam Predicted protein 1938 2130 - -
Seca6g03248 2142 Pfam Domain of unknown function (DUF6469) 81 205 IPR045529 -
Seca6g03248 2142 Gene3D - 634 846 IPR027417 -
Seca6g03248 2142 FunFam P-loop containing nucleoside triphosphate hydrolase 634 841 - -
Seca6g03248 2142 Gene3D - 168 633 IPR027417 -
Seca6g03248 2142 SUPERFAMILY Cytochrome P450 1666 2135 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 2081 2104 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 2032 2056 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 2071 2081 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 1693 1712 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 1948 1974 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 1811 1829 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 1991 2009 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 PRINTS E-class P450 group I signature 1717 1738 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 Gene3D Cytochrome P450 1657 2130 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Seca6g03248 2142 CDD SF1_C_Upf1 636 822 IPR047187 -
Seca6g03248 2142 Pfam AAA domain 613 808 IPR041679 -
Seca6g03248 2142 PANTHER MAMMARY TURMOR VIRUS RECEPTOR HOMOLOG 1, 2 MTVR1, 2 187 1727 IPR039904 -
Seca6g03248 2142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 823 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03248 Seca-Chr6 99176120 99186873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03248 1635 2141 Cytochrome P450 AT5G07990 45.614 6.57e-152 479
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03248 - - aprc:113858327 2094.7