Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03247 ATGGGCAACTGTTGCTCCCAAGGCAACGCCGCCGATGCCCCGGCAGCCGCCGACTCCGTTGCCGACAAGGGAGAATCCAACCACCATGAATTAGGAGACAATAATGACCCATCCACCACCACAAACCCTACCACACCACCACCAACATCCAAGCCACCACCACCCTCAGCCTCACCTCCTCCTTCTCAATCAAAATCCTCCAAACCAGGGGCCATTGGTCCTGTGCTAGGGAGGCCAATGGAGGATGTGAGAGCAACATACACCATAGGGAAGGAGCTAGGGAGGGGACAATTTGGTGTGACACATTTGTGCACAAATAAGACAACAGGAGAGCAATTTGCATGCAAGACAATTGCAAAGAGGAAGCTTGTGAATAAGGAAGACATAGAGGATGTGAGGAGAGAGGTGCAAATCATGCACCATCTCACAGGTCAACCTAACATTGTGGAACTCAAAGGTGCTTATGAGGATAAACAATCGGTTCATTTGGTTATGGAGTTATGTGCTGGTGGTGAGCTCTTTGATCGCATCATTGCAAAAGGACATTACACTGAACGTGCTGCTGCTTCCTTGTTGAGAACCATAGTGCAGATTGTTCACACTTTCCATTCCATGGGTGTCATTCATAGAGACCTTAAGCCTGAGAATTTCCTCTTGTTGAATAAGGATGAGAATTCACCCCTCAAGGCCACAGATTTTGGTCTATCTGTCTTTTATAAGCAAGGAGAGACTTTCAAAGACATTGTTGGTAGTGCATATTATATAGCACCTGAGGTCTTGAAGAGAAAATATGGGCCAGAAGTTGACATATGGAGTGTTGGTGTCATGCTATACATTCTTCTATGTGGTGTCCCTCCATTTTGGGCAGAATCCGAACATGGTATATTCAATGCCATTTTAAGAGGTCACATTGACTTCACAAGCGACCCATGGCCTTCAATTTCACCTGCAGCAAAAGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAACAGAGACTCACAGCATACGAAGTTACCCTAATAAAGTCACATATAATAATTAATGAAATAATTGTTATGTTAAAAACAGATCATCCTTGGATCAAGGAGGATGGAGAAGCACCAGATAAACCACTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTCAGGGTCATTGCTGGATGTTTATCAGAAGAAGAAATCATGGGGTTGAAGGAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGGACAAAGCTAACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCTGATGGCAATGGAACCATAGATTACGATGAGTTCATCACAGCAACAATGCACATGAATCGTATGAACAGAGAAGAACATCTTTACACTGCCTTCCAATACTTTGATAAAGATAATAGCGGGTTCATTACTACTGAAGAACTAGAACAAGCTCTCCATGAATTTAACATGCATGATGGTAGAGACATCAATGAAATCCTTAAAGAAGTTGATGGAGATAATGATGGCCGCATTAACTATGATGAGTTTGCGGCAATGATGAGGAAAGGGAATCCAGAAGCTCATACTAAGAAGAGGCGTGATTCATTTGTTTCACATTAA 1683 0.429 MGNCCSQGNAADAPAAADSVADKGESNHHELGDNNDPSTTTNPTTPPPTSKPPPPSASPPPSQSKSSKPGAIGPVLGRPMEDVRATYTIGKELGRGQFGVTHLCTNKTTGEQFACKTIAKRKLVNKEDIEDVRREVQIMHHLTGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLLRTIVQIVHTFHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGETFKDIVGSAYYIAPEVLKRKYGPEVDIWSVGVMLYILLCGVPPFWAESEHGIFNAILRGHIDFTSDPWPSISPAAKDLVRKMLNSDPKQRLTAYEVTLIKSHIIINEIIVMLKTDHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRVIAGCLSEEEIMGLKEMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGFITTEELEQALHEFNMHDGRDINEILKEVDGDNDGRINYDEFAAMMRKGNPEAHTKKRRDSFVSH. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03247 560 ProSitePatterns EF-hand calcium-binding domain. 490 502 IPR018247 -
Seca6g03247 560 PANTHER SERINE/THREONINE-PROTEIN KINASE 82 537 - -
Seca6g03247 560 ProSiteProfiles EF-hand calcium-binding domain profile. 441 476 IPR002048 GO:0005509
Seca6g03247 560 ProSiteProfiles EF-hand calcium-binding domain profile. 477 512 IPR002048 GO:0005509
Seca6g03247 560 ProSitePatterns Protein kinases ATP-binding region signature. 93 120 IPR017441 GO:0005524
Seca6g03247 560 FunFam calcium-dependent protein kinase 1 173 369 - -
Seca6g03247 560 Pfam EF-hand domain pair 410 470 IPR002048 GO:0005509
Seca6g03247 560 Pfam EF-hand domain pair 479 542 IPR002048 GO:0005509
Seca6g03247 560 SUPERFAMILY Protein kinase-like (PK-like) 86 349 IPR011009 -
Seca6g03247 560 SUPERFAMILY EF-hand 402 542 IPR011992 -
Seca6g03247 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Seca6g03247 560 MobiDBLite consensus disorder prediction 41 62 - -
Seca6g03247 560 SMART efh_1 481 509 IPR002048 GO:0005509
Seca6g03247 560 SMART efh_1 516 544 IPR002048 GO:0005509
Seca6g03247 560 SMART efh_1 409 437 IPR002048 GO:0005509
Seca6g03247 560 SMART efh_1 445 473 IPR002048 GO:0005509
Seca6g03247 560 Gene3D Phosphorylase Kinase; domain 1 88 172 - -
Seca6g03247 560 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Seca6g03247 560 ProSiteProfiles EF-hand calcium-binding domain profile. 516 547 IPR002048 GO:0005509
Seca6g03247 560 ProSitePatterns EF-hand calcium-binding domain. 525 537 IPR018247 -
Seca6g03247 560 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
Seca6g03247 560 FunFam Calcium-dependent protein kinase 1 89 172 - -
Seca6g03247 560 SMART serkin_6 87 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03247 560 MobiDBLite consensus disorder prediction 1 79 - -
Seca6g03247 560 CDD STKc_CAMK 87 339 - -
Seca6g03247 560 ProSitePatterns EF-hand calcium-binding domain. 454 466 IPR018247 -
Seca6g03247 560 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03247 560 ProSiteProfiles Protein kinase domain profile. 87 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03247 560 Gene3D Transferase(Phosphotransferase) domain 1 173 349 - -
Seca6g03247 560 FunFam Calcium-dependent protein kinase 1 370 545 - -
Seca6g03247 560 Gene3D - 350 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03247 Seca-Chr6 99171090 99175646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03247 1 555 EF-hand Containing Proteins AT5G12180 78.276 0.0 890
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca6g03247 Pkinase 3.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03247 K13412 - gmx:100781355 932.169