Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03239 ATGGCAGCCTGCTTGAAACCATCTAGCAGTGAAGATGACTCTGTGATACTCTTTTCAACTTCTGATTCTCCTGAAGAGTCCACCAGTCCTTCTTCTTCTTTCTACCATTCACCACCACCAGCACTACAACAATTCAGAACTGCATACAAACTTTCTATCAGAAATCTCTCCTATACTTTGCACCCACATAAGACCACTCCCTTTTCACTTTGTCACCTGACCCAAAAACCCAAGCCAGTAAATATACTCAACTCTGTCTCTTTTGTTGCCAGAAGTTCTGAGATTGTTGCTGTTGTTGGTCCTAGTGGCACAGGGAAGTCTACTCTTCTTCGAATAATCTCTGGGAGGATAAAAGATAAAGATTTTGATCCTAAAAGTATCTCAATCAATGATCAGCCAATGACTAGTCCAGCTCAGTTGAGGAAGATATGTGGCTTTGTGGCACAAGAGGACAATTTGCTTCCTCTTCTAACTGTGAAAGAAACCTTGTTGTTTAGTGCCAAGTTTAGGCTAAAAGAAATGACATCAAAGGATAGAGAACTGAGGGTAGAAAGCTTGATGCAAGAGCTAGGACTTGTTCATGTTGCAGATAGTTTTGTTGGGGATGAAGAGAATAGAGGGATATCTGGTGGAGAGAGGAAGAGGGTATCAATTGGAGTTGATATGATTCACAATCCTCCAATTTTACTCCTAGATGAGCCAACATCTGGCCTTGACAGCACTTCAGCTCTGCATGTGATAGAGCTTCTGTCATCAATGGTTAAAGCAAAGCAAAGGACAGTAGTCCTCTCCATCCACCAACCCAGCTATAGAATATTGCAGTATATTTCTAAGTTCTTGATTCTCTCTCATGGTTCAGTTGTTCACAATGGTAGCCTAGAATCACTAGAGGAAACCATAACTAAATTGGGATTTCAAATTCCAATACAACTGAATGCTTTAGAATTTTCCATGGAAATTATACGCAGGTTAGAAGATTCTAGTTCCAAATATGACACTTCCACCATTGAGGAAAAGGAGCCTTTTCCAAATCCTATGTGGCCAGAGGAAGAAAATGGTGGAGTCCAATCACAATATCACAGGGAAAGTTTTGGCAATCTTTGTTATGTAAACTTGATGGAGATACTATTTCTCTGCTCAAGATTTTGGAAAATCATTTATAGAACAAAGCAGCTTTTCTTGGCCAGAACAATGCAAGCGTTAGTTGGTGGATTTGGGCTAGGAAGTGTTTATATAAAGATAAGGAAGGATGAAGGAGGAGTTGCAGAAAGGTTAGGTCTGTTTGCATTTAGTCTTAGTTTTCTTCTGTCTTCTACAGTTGAAGCACTTCCAATATACCTTCAAGAGAGAAGTGTTCTAATGAAAGAAGCCTCAAGGGGAGCCTATAGAATTTCCTCTTACATGATAGCCAACACTTTTGTCTTCCTACCTTTCTTGTTTGTAGTATCTATACTTTTTGCAGTTCCTGTGTATTGGCTTGTAGGACTCAATCCTTCCCTTAGTGCCTTCACCTTCTTCACTTTTGTGGTTTGGCTCATTGTGCTCATGGCAAGTTCTCTAGTACTCTTCTTAAGTGCAGTCTCTCCTGATTTCATTTCAGGGAATTCCCTCATCTGCACAGTTCTTGGAGCCTTCTTCCTCTTCTCAGGATACTTCATCCCAAAAGAGAGCATTCCAAAATATTGGCTTTTCATGTATTATGTGTCCCTCTATAGGTACCCTTTGGATTCATTGCTCACAAATGAGTATTGGAATGTTAAAAATGAGTGTTTCTCACAACAAACAGAGGGCTCCCAGTGTTTGGTTACTGGCTTTGATGTGTTGAAGAGTAGAGGGCTTGAAAAGGATAACAGGTGGATGAATGTGGGAATAATGCTAGGATTCTTTGTGTTCTATCGTGTGCTTTGTTGGGTAATACTTGCTCGAAAGGCCTCCAAAACAACAATATAA 1950 0.4021 MAACLKPSSSEDDSVILFSTSDSPEESTSPSSSFYHSPPPALQQFRTAYKLSIRNLSYTLHPHKTTPFSLCHLTQKPKPVNILNSVSFVARSSEIVAVVGPSGTGKSTLLRIISGRIKDKDFDPKSISINDQPMTSPAQLRKICGFVAQEDNLLPLLTVKETLLFSAKFRLKEMTSKDRELRVESLMQELGLVHVADSFVGDEENRGISGGERKRVSIGVDMIHNPPILLLDEPTSGLDSTSALHVIELLSSMVKAKQRTVVLSIHQPSYRILQYISKFLILSHGSVVHNGSLESLEETITKLGFQIPIQLNALEFSMEIIRRLEDSSSKYDTSTIEEKEPFPNPMWPEEENGGVQSQYHRESFGNLCYVNLMEILFLCSRFWKIIYRTKQLFLARTMQALVGGFGLGSVYIKIRKDEGGVAERLGLFAFSLSFLLSSTVEALPIYLQERSVLMKEASRGAYRISSYMIANTFVFLPFLFVVSILFAVPVYWLVGLNPSLSAFTFFTFVVWLIVLMASSLVLFLSAVSPDFISGNSLICTVLGAFFLFSGYFIPKESIPKYWLFMYYVSLYRYPLDSLLTNEYWNVKNECFSQQTEGSQCLVTGFDVLKSRGLEKDNRWMNVGIMLGFFVFYRVLCWVILARKASKTTI. 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03239 649 SMART AAA_5 92 294 IPR003593 GO:0016887
Seca6g03239 649 Gene3D - 69 318 IPR027417 -
Seca6g03239 649 MobiDBLite consensus disorder prediction 1 38 - -
Seca6g03239 649 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 31 634 - -
Seca6g03239 649 Pfam ABC transporter 83 236 IPR003439 GO:0005524
Seca6g03239 649 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524|GO:0016887
Seca6g03239 649 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 300 IPR027417 -
Seca6g03239 649 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 309 IPR003439 GO:0005524
Seca6g03239 649 FunFam ABC transporter G family member 23 74 307 - -
Seca6g03239 649 Pfam ABC-2 type transporter 266 332 IPR043926 GO:0140359
Seca6g03239 649 MobiDBLite consensus disorder prediction 12 38 - -
Seca6g03239 649 Pfam ABC-2 type transporter 375 583 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03239 Seca-Chr6 99039517 99041466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03239 80 296 Calmodulin-binding Proteins AT2G36910 30.045 1.13e-14 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03239 K05681 - gmx:100783883 1110.9