Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03232 ATGGCTGAACAAGGCACAAGATATCCCCTTTTCTATAGCTTCGATGATGAATCCTCTGACCATCAAACTCCTTACATTGATGAATCGTCTTTTTACCGACAGCCACTACCCCCCATCGTCCCTCCCCATCCCCAGGTAGTTGCACTTGCACCACCACCGAAGAAGCCACGTGGAAGGCCCCCAGGTTCGAAGAACAAGCCAAAACCACCACTTGTGATCAACAAAACAAACGATCAAGCCATGAAAGGTGTGGTGATCGAAGTTGGCGTAGGCAAAGACGTGATGGAAACTGTTATTCAGTATGCTCACAGCCACAACGCTGGAATCACAGTGCTTACTGCGTCAGGCTCTATTTCCAACTTGACTCTTTGCCCCTCATTTTCCTATTCTACTCCTGCTTTTATCCTCCATGGACCTTTTACTTTGTTTTCCCTCAAGGGCTCCTATATAAATTCCCCTTCCCATCCTTCTCTTGTTGATGGTGCTTCCTTATCTTCTTCATCTAATCCTAACCCATTATCTTCCTTTATGATTTCCTTTTCAAGCGCTCAAGGCCAAATCTTTAGTGGGATTGTTGGTGGGAAGGTTGTGTCAGCTAATAAGGTGGTGGTGGTAGCCACCTTGCTCAAGAATCCTGAGTTTCAAACGTTTGCTTGTGTCAATGAAAATCAAGGTGAAGAAGGGAATTATAGCCTTAATAATTAA 705 0.4482 MAEQGTRYPLFYSFDDESSDHQTPYIDESSFYRQPLPPIVPPHPQVVALAPPPKKPRGRPPGSKNKPKPPLVINKTNDQAMKGVVIEVGVGKDVMETVIQYAHSHNAGITVLTASGSISNLTLCPSFSYSTPAFILHGPFTLFSLKGSYINSPSHPSLVDGASLSSSSNPNPLSSFMISFSSAQGQIFSGIVGGKVVSANKVVVVATLLKNPEFQTFACVNENQGEEGNYSLNN. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03232 234 CDD DUF296 85 194 IPR005175 -
Seca6g03232 234 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 39 228 IPR014476 GO:0003680
Seca6g03232 234 SUPERFAMILY AF0104/ALDC/Ptd012-like 80 215 - -
Seca6g03232 234 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 209 IPR005175 -
Seca6g03232 234 MobiDBLite consensus disorder prediction 35 67 - -
Seca6g03232 234 Gene3D - 81 223 - -
Seca6g03232 234 ProSiteProfiles PPC domain profile profile. 78 232 IPR005175 -
Seca6g03232 234 MobiDBLite consensus disorder prediction 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03232 Seca-Chr6 98914697 98915401 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03232 54 229 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.463 2.68e-29 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03232 - - aprc:113857474 166.392