Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03230 ATGGCTGAACTTGGCATAGGAGTTTCCCTCTCCTCTGATGAGGACTACTCCTCAGACCAACAGACTCCCTACACCGGTGGCAGCGGCGGAGGTGGTGGTGGTGGTTCCTCCTCTCGCCGGCGAACCACACCTCCCTACCTCGAGGCAGGGGATGCCCCTCCACCATCCAAAAAGCCACGTGGCAGACCCCCAGGTTCCAAAAACAAGCCAAAGCCTCCTGTTGTGATCACCCAAGACAATGACAAATCCATGAAACCTGTGGTAATGACAATCGGTGCTGGCAACGATGTGATGGACACTATTATATCGTTTGCTCGGCGTTGTAACGCTGGAATCACTGTGTTGAGTGGCTCTGGCTCTGTTTCTAAGGTTACCCTTTGCAACCCTTTTTCCCATGCTTCACCTCCTTTCACCCTTCATGGTCCTTTCACTTTGTTGGCCTTGAATGGCACCTTTTTGAACCCTCCTATCCCTCATTCCCTTGCTGCTTCTTCTTCTTCTTCTTCTTCATCATCCAGCCCTAACCCAGCATCTTCCTTTGGGATTTCCTTCTCTGGTGCCCAAGGTCAGATCTTTGGTGGGGTTGTTGGTGGGAAAATTGTGTCTGGTAATAATGGGGTTGTGCTGGTCACTTCCTTGATTAAGAATCCCGAGGTTCACAGGGTTACTGGTGTGGATGAAGATGATGGTGATGAAGGGGATAACCCTAACAATCAAGGAGGTACTGCTGCTGGTGGTTCTGGTGCTGGTGTTGGTGGTGACAGCTTGTTCAATCCATTGATGAATTCTCAAGTCCCTTCTGATGCAAATGTGCTGCAATGGGGTCAAACTGCTCCTCGCCATCCTAATTACTGA 855 0.5041 MAELGIGVSLSSDEDYSSDQQTPYTGGSGGGGGGGSSSRRRTTPPYLEAGDAPPPSKKPRGRPPGSKNKPKPPVVITQDNDKSMKPVVMTIGAGNDVMDTIISFARRCNAGITVLSGSGSVSKVTLCNPFSHASPPFTLHGPFTLLALNGTFLNPPIPHSLAASSSSSSSSSSPNPASSFGISFSGAQGQIFGGVVGGKIVSGNNGVVLVTSLIKNPEVHRVTGVDEDDGDEGDNPNNQGGTAAGGSGAGVGGDSLFNPLMNSQVPSDANVLQWGQTAPRHPNY. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03230 284 MobiDBLite consensus disorder prediction 11 43 - -
Seca6g03230 284 MobiDBLite consensus disorder prediction 48 70 - -
Seca6g03230 284 Gene3D - 84 230 - -
Seca6g03230 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 214 - -
Seca6g03230 284 ProSiteProfiles PPC domain profile profile. 81 237 IPR005175 -
Seca6g03230 284 MobiDBLite consensus disorder prediction 1 82 - -
Seca6g03230 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 243 IPR014476 GO:0003680
Seca6g03230 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 85 213 IPR005175 -
Seca6g03230 284 CDD DUF296 85 213 IPR005175 -
Seca6g03230 284 MobiDBLite consensus disorder prediction 220 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03230 Seca-Chr6 98890683 98891537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03230 57 284 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 40.000 4.45e-42 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03230 - - adu:107463674 191.045