Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03229 ATGAAACCCATGGTGATCCATGTGGACCCAGGTGCAAACGTGATGGAAGTCATCATTAACTATGCTCACAACCACAATGCTGGAATCATGGTGCTTAGTGGGTCTGGCTCTATTTCCAACTTGACTCTTTCCCACCCTGTTTCCTATTCTCCTTCTTCTCCTTTCACCCTTCATGGACCCTTTACTTTGTTTGCCTTTAGCGGTGCCTATATAAGTTTCCCTAACTCCCCTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATGTACACATCATCTTCCTTTAGCATTTCCTTCACAAGCGCTCAAGGTCAGATGTTTAGTGGGATTGTCGGTGGGAAGGTTGTGTCGTCTAATGATGTGGAGGTGGTGGTAAGCTTGCTCAAGAATCCTGATTTTCATAGGGTTCCTGGTGTAAATGAAAATGAAGGTGAAGAAGGGTATAACCCTAATAATTAA 462 0.4416 MKPMVIHVDPGANVMEVIINYAHNHNAGIMVLSGSGSISNLTLSHPVSYSPSSPFTLHGPFTLFAFSGAYISFPNSPLDGASNSSSNPNMYTSSSFSISFTSAQGQMFSGIVGGKVVSSNDVEVVVSLLKNPDFHRVPGVNENEGEEGYNPNN. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03229 153 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 129 IPR005175 -
Seca6g03229 153 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 147 IPR014476 GO:0003680
Seca6g03229 153 SUPERFAMILY AF0104/ALDC/Ptd012-like 1 142 - -
Seca6g03229 153 CDD DUF296 2 126 IPR005175 -
Seca6g03229 153 Gene3D - 2 147 - -
Seca6g03229 153 ProSiteProfiles PPC domain profile profile. 1 152 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03229 Seca-Chr6 98855477 98855938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03229 1 148 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.108 4.86e-21 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03229 - - pop:7463887 127.487