Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03228 ATGGCTGAACAACACATGACGTATTCCCTTTCACGTAGCTTCGATGATGACTTCTCAAACCAACACACTCCCTATTTCCCTGGTAGCGGTGGAGAAGGGTCCTCCTTTTACTGGCAACCGCCACCCTCCACCATCCCTCCTCCTCCCCACCACCAGGTAGCTCCGCCACCATCGGCTAAGCCACGTGGCAGACCCCCAGGTTCCAAAAACAAGCCAAAGCCACCGCTTGTGATCACCCAAACAAACGAGCAAGACATGAAACCCGTGGTGATCCATGTGGACCCAGGTGTAGATGTGATGGAAGCCATTATTAACTATGCTCACAACCACAACGCCGGAATCATGGTGCTCAGTGGGTCTGGCTCTATTTCCAACTTGACTCTTTCCCACCCTGTTTCCTATTCTCCTTCTTCTGCTTTCACCCTTCATGGACCCTTTACTTTGTTTGCCTTTAGTGGTGCCTATATAAGTTTCCCTAATTCCCTTCTTGATGGTGCTTCGAATTCCTCATCCAACCCTAACATATACACATCATCTTCCTTTAGCATTTCCTTCACAAGCGCTCAAGGTCAGATGTTTAGTGGGATTGTTGGTGGGAAGGTTGTGTCGGCTAATGATGTGCAGGTGGTGGTTAGCTTGCTTAAGAATCCCGATTTTCATAGGGTTCCTGGTATCAATGAAAATGACGGTGAAGAAGGGTATAACCCTAACAATTAA 717 0.4812 MAEQHMTYSLSRSFDDDFSNQHTPYFPGSGGEGSSFYWQPPPSTIPPPPHHQVAPPPSAKPRGRPPGSKNKPKPPLVITQTNEQDMKPVVIHVDPGVDVMEAIINYAHNHNAGIMVLSGSGSISNLTLSHPVSYSPSSAFTLHGPFTLFAFSGAYISFPNSLLDGASNSSSNPNIYTSSSFSISFTSAQGQMFSGIVGGKVVSANDVQVVVSLLKNPDFHRVPGINENDGEEGYNPNN. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03228 238 ProSiteProfiles PPC domain profile profile. 83 237 IPR005175 -
Seca6g03228 238 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 214 IPR005175 -
Seca6g03228 238 CDD DUF296 87 211 IPR005175 -
Seca6g03228 238 MobiDBLite consensus disorder prediction 1 84 - -
Seca6g03228 238 SUPERFAMILY AF0104/ALDC/Ptd012-like 84 226 - -
Seca6g03228 238 MobiDBLite consensus disorder prediction 40 72 - -
Seca6g03228 238 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g03228 238 Gene3D - 86 235 - -
Seca6g03228 238 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 52 231 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03228 Seca-Chr6 98849992 98850708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03228 60 233 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 38.506 2.50e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03228 - - pop:7463887 182.185