Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03223 ATGTCTTCTTCACTCGTGAAGATCCAAGACGAACAGGTCCTCGCCAACGATCTTCAGGATCTTTCAATCAAAGATCTGGATATTGTTGATGTTCAGAGTGAAAAGGGGAGTAAAGAAGAGGGATTTGGAAACCATGGGGGAATCTGTGCTATTTGCTTGGATAAGATAGTGCTACAGGAAACTGCTCTTGTAAAAGGTTGCGAGCATGCCTACTGTGTAACATGCATCCTTCGCTGGGCCACGTACAGTCAGAACGTTACCTGCCCTCAGTGTAAACATCCATTTGAGTTCCTCAATGTCCATCGTTCTCTTGATGGCAGCATTCAAGATTACATGTTCGAGGAAAGTGTCTGCCTGCTACTTCGGGCCCAATGGTTCAAACCGTTAACTGTTGTTGAAGAACATGTGGTTCATGAAGATACCTATGATGAAATTGAAGACTATTATCAATATGAGGAGGAAGATGATGATCTAGATGATGAAGTTTACTATGGAGGCTCATCGAGTTTTCGCATTGGCAACCGTAGATGGGGAGACAATGGTTATGTTAGGGCTGGGCGTCAAGAAGCACGGCCAGTTCAGCGATCAAACTTCCATGATTCAGGAGCAAGTTCATCCCGTGAACCAAAGAAAAAAGAGGCTGCAAAAAGTACAACAGGAAGGCGAGCAAAGAGGGCACTGAAAAGGGAAGCTGCTGATAAGGCAGCTGAAGCAAAGCATCAACAGCATTTGCTAAGGTTGGGTAGGAAGTGA 753 0.4489 MSSSLVKIQDEQVLANDLQDLSIKDLDIVDVQSEKGSKEEGFGNHGGICAICLDKIVLQETALVKGCEHAYCVTCILRWATYSQNVTCPQCKHPFEFLNVHRSLDGSIQDYMFEESVCLLLRAQWFKPLTVVEEHVVHEDTYDEIEDYYQYEEEDDDLDDEVYYGGSSSFRIGNRRWGDNGYVRAGRQEARPVQRSNFHDSGASSSREPKKKEAAKSTTGRRAKRALKREAADKAAEAKHQQHLLRLGRK. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03223 250 ProSitePatterns Zinc finger RING-type signature. 67 76 IPR017907 -
Seca6g03223 250 CDD RING-HC_Topors 49 95 - -
Seca6g03223 250 MobiDBLite consensus disorder prediction 186 250 - -
Seca6g03223 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 96 IPR013083 -
Seca6g03223 250 ProSiteProfiles Zinc finger RING-type profile. 49 92 IPR001841 -
Seca6g03223 250 SUPERFAMILY RING/U-box 25 98 - -
Seca6g03223 250 Pfam Ring finger domain 49 92 IPR001841 -
Seca6g03223 250 SMART ring_2 49 91 IPR001841 -
Seca6g03223 250 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 250 - -
Seca6g03223 250 MobiDBLite consensus disorder prediction 204 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03223 Seca-Chr6 98784682 98788816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03223 3 250 C3H Transcription Factor Family AT5G19430 60.078 7.05e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03223 - - gmx:100777135 348.977