Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03221 ATGTGGCCGGTCGCTTCTTCCAGGCCAATCAACTACGGCCACGTGGCACAGGACATGGTTGGTCTCCGTGACGTGTTCCTGGTAGCACCTGCTTCCTCTTTCCACCATCACCACCACCACAACCACAACGAAACCCTCATAACCGAATCTCACTCTTTAAACGGTTCAAATCCTGCAACTGCACTTGGCGTTGGTGTGATCCCTCTGTTAGGAGGTGGAATTCAGTTATGGCAGGAACAACAGCACCAACAGAATCAGCAACAAACTCACTATTTGAAGAAGCATGCTCTTGTGGAACACAATGATAGTGGTGGTGGTGGTGGAATAACTGCTTTGGTTACCAATAGTGGAGGTGGTGGAACGACGACGTGTCAGGATTGTGGGAATCAAGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGAACGTGCTGCAAGAGTAGGGGTTTTGATTGCGCGACTCACGTGAAGAGCACGTGGGTTCCCGCTGCACGGCGGAGGGAACGGCAGCTCATGACGGAGACGGCAGCGGTTGCTGGTGGCTCTACCGGTTCTACAGGTCATGCTAAGAAACCAAGGCTTGTTGCTTCTCAGACCACAACAACTTCTCATACTTCCACTTCTAACACCACTCCTCCTAGGAGCTTTGACACTAGCTCTAGCCATCAAGATGCGAGTTTCAAGGAGACGATGCCTTGTCAAGTACGTGCACCGGCTGTGTTCAAGTGTGTGAGAGTGACGGCAATGGAGGATGGGGAAGATGAGTTTGCGTATCAGGCTACTGTGAAGATTGGTGGCCATGTGTTTAAAGGGCTTCTTTATGATAAAGGGGTTGAGGATAAAGATGGTTATCCTAATTTATCTGAACTGCATTTGGGTGGTGGTGGTACTGGAAATGTTGGAAGTGTTAGTGGTGCTGGTAGAAATGGGGTATCATCTTCATCTCCACTGATGGATCCATCTGATGTTTATGCAGCTTCAGGTAGTGGGGGGTTTCTTGGAGGTTCATCAACCTATGGTAATCCAATAAATTAA 1032 0.4884 MWPVASSRPINYGHVAQDMVGLRDVFLVAPASSFHHHHHHNHNETLITESHSLNGSNPATALGVGVIPLLGGGIQLWQEQQHQQNQQQTHYLKKHALVEHNDSGGGGGITALVTNSGGGGTTTCQDCGNQAKKDCSHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMTETAAVAGGSTGSTGHAKKPRLVASQTTTTSHTSTSNTTPPRSFDTSSSHQDASFKETMPCQVRAPAVFKCVRVTAMEDGEDEFAYQATVKIGGHVFKGLLYDKGVEDKDGYPNLSELHLGGGGTGNVGSVSGAGRNGVSSSSPLMDPSDVYAASGSGGFLGGSSTYGNPIN. 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03221 343 MobiDBLite consensus disorder prediction 191 227 - -
Seca6g03221 343 Pfam Domain of unknown function (DUF702) 121 278 - -
Seca6g03221 343 NCBIfam putative zinc finger domain, LRP1 type 123 165 IPR006510 -
Seca6g03221 343 MobiDBLite consensus disorder prediction 176 228 - -
Seca6g03221 343 NCBIfam LRP1 C-terminal domain 230 277 IPR006511 -
Seca6g03221 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 33 326 IPR007818 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03221 Seca-Chr6 98760091 98761870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03221 2 322 C2H2 Transcription Factor Family AT5G12330 51.304 2.06e-91 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca6g03221 DUF702 2.1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03221 - - lja:Lj6g3v0959410.1 442.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03221 6 98760091 98761870 Seca6g03221 6 98760091 98761870 ECH