Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03217 ATGTCATTCAAATCTGTGGAGGAATTCAAAGACTTTTACAAAAAATATGTCTTTCAACAAGGGTTTGGTTTTGTGATAAGAACCTCAAGAAAGAACTCTTCTGGCTGTGTTTGTAACCTTGTATTAACATGTGCACGCCAAGGACACAACAAATCAACCGTGAAGAACTCTTTCAAAAGTGTGTCATCAATCAAAGCTGATTGTGGAGCACATGTTACTGCTTGCTTGAAGTCTGATGGGTTGTATTACATAACCAAGGTCATTCTTCATCATTCTCATGATCTGAGCCCAAGCAAAGCAAGATTGTTCAAGTCAAACAAAGAGATGAGCATGCATGTAAGGAGAGTCTTGGATGTCAATGATAGGGCAGGGGTGAGATTGAACAAAAGCTTTAATTCCATTGTTACAGATGTGGGGGGCTATGAAAATTTGCCTTGTATTGAGAGAGATGCGAGGAATTATATTATAAAGGAAAGGCGAGCAATTGGCAAAGGGGGTGATGGTGAGACTCTCAAGTGCTATTTTGCTAGGATGCAAGAGCAAAATAGTGACTTTTTCTATGACATTGATTTGGATAATGATTTTCATATCAGAAATGTGTTTTGGGCAGATGCAAGAAGCAGGGCAGCATATGTGTCATTTGGTGATGTGATTACATTTGATACAACTTATCTTACAAATAAGTGCATGTCAGGCATTCCTCCCCAAGCAATCATAACTGATCAATGTTATGCTATGAAAAATGCAATTGAGACTACCTTGGAGCAATTTGTTAACCAATATGACAATGCACTTCGAGACAGGGCAGAAAAGGAGTTCCAAGCTGATTTTCAATCTTTAAATAGCACAGTGTCTTCTAATACAAAGTCTCCAATTGAAAGACAATTTCAAGCAAATTATACTCATAAAAAATTCAAAGAGGTCCAAGTCGAGTTCAGGGCTACAACTGATTGTCATGCATCATTAACACTACAAGAAGGTTGTGCATGCACTTACAATGTAGTGGAGGACATGGTTTTTGGGGATAAACCTAAAAAAGTTGACTTTATTGTGGTGTTTAATAGAGAAAACCATGATATCAAGTGTAAATTCTTGTTATTTGAATTTCGAGGCATTATGTGTAGGCATTCTCTTGATGTGTTTGGTATAGAAAGGGTGAAAGAAGTGCCTTCTAAGTATGTTTTATCAAGGTGGAGCAAGAACATGAAAAGAAGACACACATATATTAAGAGTAGTTATGATGTTAAGCAATTAAAGCCTCAAATGCAAAGATTTGCTGAATTATGTAAGAACTTTTATGAAGTTGGTGAAGTTGCTGCAGAATATGAAGACACGACTAATTTTCTACAAGAGTTGTTACATGAAGCAATGAGCAAATTGAAGGTGATGATTGCATCTAGTAAACAGTCTCAAATATGCATTGTTCGTCCTACTTGTAATGTCAATGTAATTTGTGACACGCCAATGGTGAGTGAAACCATTCATAGTCCAAAGGCAGTCCGTTGTGTAGGTCGCCCTGCTTCAAAAAGGAAAGTCTCAATATTTGAGAAAGCTATCAAAAGTTCGAAGAACAGAAGGAAGACGATGAAATCCAATCAAATGCAACAGCAAATGGTATTTTTTTATTAG 1629 0.3689 MSFKSVEEFKDFYKKYVFQQGFGFVIRTSRKNSSGCVCNLVLTCARQGHNKSTVKNSFKSVSSIKADCGAHVTACLKSDGLYYITKVILHHSHDLSPSKARLFKSNKEMSMHVRRVLDVNDRAGVRLNKSFNSIVTDVGGYENLPCIERDARNYIIKERRAIGKGGDGETLKCYFARMQEQNSDFFYDIDLDNDFHIRNVFWADARSRAAYVSFGDVITFDTTYLTNKCMSGIPPQAIITDQCYAMKNAIETTLEQFVNQYDNALRDRAEKEFQADFQSLNSTVSSNTKSPIERQFQANYTHKKFKEVQVEFRATTDCHASLTLQEGCACTYNVVEDMVFGDKPKKVDFIVVFNRENHDIKCKFLLFEFRGIMCRHSLDVFGIERVKEVPSKYVLSRWSKNMKRRHTYIKSSYDVKQLKPQMQRFAELCKNFYEVGEVAAEYEDTTNFLQELLHEAMSKLKVMIASSKQSQICIVRPTCNVNVICDTPMVSETIHSPKAVRCVGRPASKRKVSIFEKAIKSSKNRRKTMKSNQMQQQMVFFY. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03217 542 PANTHER OS01G0519700 PROTEIN 1 251 - -
Seca6g03217 542 Pfam FAR1 DNA-binding domain 11 96 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03217 Seca-Chr6 98710721 98712808 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca6g03217 FAR1 6.7e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03217 - - psat:127136936 490.345