LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g03199	ATGGAACAACATGGTGGAGTAGCAACTGGGTCGCATGAAAGGAGCGAACTTGTTCGAGTTAGGCACGGTTCGGATAGTGGGTCTAAACCCTTAAAGAATTTGAATGGTCAAATCTGTCAAATATGTGGTGATACTGTTGGATTAACAGCCACTGGTGAGGTCTTTGTTGCTTGCCATGAGTGTGCCTTCCCACTTTGTCATCCTTGTTATGAATATGAGCAAAAGAATATGAGCCAATCTTGTCCCCAGTGCAAGACTAGATACAAAAGTCACAAAGAGAGTCCTCAAATGGAGGGAGATGATGATGAAGATGATGTTGATGATCTAGAGAATGACGTCAAGTATGGCCAAGGAAATAATACCAAGGCAGGGACACAATGGGAAGAAGATGCTGACCTCTCTTCATCTTCTGGACATGATTCTCAAATACCGAACCCCCATGTTACAAATGGGCAGCTGATGTCTGGTGATATTCCATGTGCTACTTCTGATGCTCAATCTGTGCAAACTACATCAGGTCCTTTGGGTCAATCCGGAAAGGTTCACTCACTCCCCTATGTTGATCCAAAGCAACCAGGTCCTGAGAGTGATGAGGAGATCAGAAGAGTGCCGGAGATTGGAGGTGGATCTGCTGGAACTTCAGCCTCTCGTCCAGAAATTGGTTCGACTGCTGGTCCGGAACGTGTTCAGGGGACAGGGGAGGGTCAGAAGAAGAGAGGGAGAAGCCCAGCAGACAAAGAAAGCAAGCGGCTAAAGAGGCTACTGAGGAACAGAGTTTCGGCTCAGCAAGCAAGGGAGAGGAAAAAGGCATACTTGAATGATTTGGAAACAAGAGTCAAAGACTTAGAGAAGAAGAATTCAGAGCTCAAAGAGAGACTTTCCACTTTGCAGAATGAGAATCAAATGCTTAGACAAGTATGTCAATTTTGCACATTTTGTTACCATGTTGTCATCATCATCATTATTGTCATCATATTATACATGTTCTCTAAATCATCATCATCATCACCATCACCATCACCATCACCATCATGGTGTTATTGA	1044	0.4416	MEQHGGVATGSHERSELVRVRHGSDSGSKPLKNLNGQICQICGDTVGLTATGEVFVACHECAFPLCHPCYEYEQKNMSQSCPQCKTRYKSHKESPQMEGDDDEDDVDDLENDVKYGQGNNTKAGTQWEEDADLSSSSGHDSQIPNPHVTNGQLMSGDIPCATSDAQSVQTTSGPLGQSGKVHSLPYVDPKQPGPESDEEIRRVPEIGGGSAGTSASRPEIGSTAGPERVQGTGEGQKKRGRSPADKESKRLKRLLRNRVSAQQARERKKAYLNDLETRVKDLEKKNSELKERLSTLQNENQMLRQVCQFCTFCYHVVIIIIIVIILYMFSKSSSSSPSPSPSPSWCY.	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g03199	347	Gene3D	Single helix bin	268	308	-	-
	Seca6g03199	347	MobiDBLite	consensus disorder prediction	232	267	-	-
	Seca6g03199	347	MobiDBLite	consensus disorder prediction	90	267	-	-
	Seca6g03199	347	PANTHER	TRANSCRIPTIONAL ACTIVATOR HAC1	162	330	IPR044280	GO:0000981\|GO:0045944
	Seca6g03199	347	MobiDBLite	consensus disorder prediction	1	29	-	-
	Seca6g03199	347	Pfam	bZIP transcription factor	246	305	IPR004827	GO:0003700\|GO:0006355
	Seca6g03199	347	SUPERFAMILY	Leucine zipper domain	249	306	IPR046347	GO:0003700\|GO:0006355
	Seca6g03199	347	FunFam	Transcription factor HY5	268	308	-	-
	Seca6g03199	347	Coils	Coil	244	306	-	-
	Seca6g03199	347	Pfam	Zinc-binding RING-finger	29	106	IPR027934	-
	Seca6g03199	347	CDD	bZIP_HY5-like	250	301	-	-
	Seca6g03199	347	MobiDBLite	consensus disorder prediction	114	178	-	-
	Seca6g03199	347	CDD	mRING-HC-C4C4_CesA	37	87	-	-
	Seca6g03199	347	SUPERFAMILY	RING/U-box	23	107	-	-
	Seca6g03199	347	ProSiteProfiles	Zinc finger RING-type profile.	39	85	IPR001841	-
	Seca6g03199	347	SMART	brlzneu	245	309	IPR004827	GO:0003700\|GO:0006355
	Seca6g03199	347	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	252	267	IPR004827	GO:0003700\|GO:0006355
	Seca6g03199	347	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	22	112	IPR013083	-
	Seca6g03199	347	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	247	305	IPR004827	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g03199	Seca-Chr6	98498016	98502423	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g03199	1	238	Glycosyltransferase	AT4G32410	54.167	1.78e-59	204

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Seca6g03199		zf-UDP	2.2e-40	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g03199	K10999		-	aprc:113855639	543.117