Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03196 ATGGCATTTTTTAAGAACTTTTCACATGATGAAGTTTCACATGGGGTCTTGGAAGATAAAAGCCAAGGACAGAATGCTGACAGAATTCATAGATCAATAGGTAATGAATGTGCTGATGCAACTTCTAGTGAAAAGGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGTGAACCAGATGGTACCAGTAGGCTGCAGAAGGATGCAACTGCTGATGATCAAGTTGGTACAAGAGAATCAAACATAGAAACTACAAGCAGGAAAACAGCTACTGTTGGAAGGTGGGGTTCCTCATTTTGGAAGGACTGCCAGCCTATGCTCCCTCAGAATGGTTCTGAATCTGGGCATGAATCAAAAAGTGGATCAGACTATAGAAATGCAGATGAGTCCGAAGATAATTCATCAGAAGGAAGAGGGGAAAGATTAGACTCAGAAGATGATGATGGACAAAAAGATTCAGGAAAAGGTCCTCGAGGACATTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAGGAGCAGAGTGACTCCTTGCATTACAGGGGTTTTCACCAACCCACTGGCTCAGATTCATGGCCTCAGCGCAAGTCTACTGTTGTCAATAGGCGTGTACATAGGAAATCTAGGATTTCAGATGATGCTGAAGATGATGATGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCGGACTTTGAGCCTACAACAAGTGGCCGTGCTGCAAACAAGGATAAAGATTGGGAAGGCGAAGACTCAGATGAAGCTGATGATTGTGATGAGGACATAGATGTCTCAGATAATGATGATTCTTACTTTGATAAGAAGGGTAAGGGAAGGCAACGAGGTAAAGTTGGGCGATGTGCAAGATCTACCAGAGATCGCAAATCAAATACTTCATCCAGTAGACAAAGAAGAGTTCAATCTTCTTTTCAGGATGAAGATGATGAGTCTACAACAGAGGATTCTGACAGTGAGAGTGACAAAGATTTCAAAAGCTTGAAAAAGAGAGGTGTACATGTACGCAAGAATAGTGGTCGTTCAGCTGCACCTACAAGTTATTTTATGCACAACAATGAGGTTCGCACTTCTAGCAGGACAGTGAGGAAAGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAGTCCCAAAAGGAAGAAATTGAAGAGGATGAAGGGGACTCCATTGAAAAGGTGCTCTGGCATCAGCCAAAGGGCATGGCTGCAGAGGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTTTGTACCTGATTGGAATGAAATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCATTGTCAGTGGAAGTCTTTTGTTGAGTTGCAAAATCTCAGTGGTTTTAAGAAAGTTTTGAACTACACAAAAAAAGTGACTGAGGACATCAGGTACAGGATGAGAATCTCAAGAGAGGAGATTGAAGTCAACGATGTGAGTAAGGAGATGGATTTAGATATTATCAAGCAAAACAGTCAGGTGGAAAGAATAATTGCTGATAGGATTAGCAAAGATAATTCTGGTAACGTTATTCCAGAATACTTGGTTAAGTGGCAAGGACTATCTTATGCTGAAGTGACTTGGGAGAAGGACATCAATATTGCTTTTGCTCAACATGCTATTGATGAATATAAGGCCCGTGAGGCTGCAATGTCAGTTCCAGGAAAGATGGTAGATCTTCAGCGTAAGAAGAGTAAAGAAAGTTTGCGGAAACTTGATGAACAACCTGAATGGTTGAAGGGTGGAAAGCTCCGTGACTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCTGTATCTATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCATTGTCTACCTTATCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTCTATGTTGGTACTCGTGCAAGTAGAGAGGTTTGCCAACAATATGAATTTTATAATGATAAAAAAGCTGGCAGGCCAATAAAGTTCAATGCACTATTGACTACATATGAAGTAGTTCTGAAGGATAAGGTAGTTCTCTCCAAGATCAAATGGAACTATCTGATGGTAGATGAGGCTCATAGACTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGCTGCTTATCACTGGTACTCCACTGCAAAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGATTCTGATAAATTCAAGAGCAAGGATGACTTTGTTCAAAACTATAAGAATCTAAGTTCATTCAATGAGAATGAGCTTGCTAATCTTCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATTAAAGATGTGGAGAAATCGTTACCCCCGAAAATTGAGCGTATTCTTAGGGTTGATATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGCAACTTTCATGATTTGAACAAAGGAGTTCGAGGGAATCAGGTTTCTCTTCTAAATATTGTAGTAGAATTGAAGAAGTGCTGTAACCATCCCTTCCTGTTTGAAAGTGCTGACCACGGTTATGGTGGGGACTCCGGAAGTAGTGACAGTAGTAAACTAGATAGAATTGTCTTTAGTAGTGGCAAGCTTGTCATTCTTGATAAGCTACTTGTCAGATTGCATGAAACAAAACATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGTTAGATATACTGGCAGAGTATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGCACAAAAGCTGAGCTGCGACAGCAGGCAATGGATCATTTCAATGCACCAGGTAGTGATGATTTTTGCTTCCTTCTTTCAACGCGAGCAGGAGGTTTGGGTATCAATCTTGCCACAGCAGACACTGTTATAATATTTGATTCAGATTGGAATCCTCAAAATGATCTGCAGGCAATGAGTAGAGCTCATCGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGCAAAAGTGTTGAGGAAGATATTTTGGAACGTGCTAAGAAGAAGATGGTTCTCGACCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGTCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCAGCAATCTTAAGATTTGGAGCAGAGGAGCTTTTCAAGGAAGAAAGAAACGAAGAAGAAAGCAAAAAACGACTCTTAAGTATGGACATAGATGAGATTCTTGAAAGAGCTGAGAAGGTCGAAGAGAAGGAAGATGAGGGAGAACAAGCACATGAGTTATTAAGTGCCTTTAAGGTTGCTAATTTCTGTAATGATGAAGATGATGGAAGTTTCTGGAGCCGCTGGATAAAGCCTGAAGCTGTTGCCCAAGCAGAGGTAGCTCTTGCTCCACGTGCTGCAAGGAATATTAAAAGCTATGCCGAGGATAATCAATCTGAAAGAAGTAGCAAAAGAAAAAAGAAGGAAAGTGAACTGCCAGAACGAGTTCAGAAACGCCGAAAAGCAGAGTATTCAGCTCCTACAACACCAATGATTGATGGGGCAACTGCCCAAGTTAGAAGCTGGTCGTATGGGAATTTGTCTAAAAGAGATGCACTCCGTTTTTCTCGTTCAGTTATGAAATTTGGAAATGAGAGCCAAATCGGCTTAATTGCTGCTGAGGTAGGTGGTGCAGTAGGAGCAGCTCCACTTGAAGCACAAATTGAACTCTTCAATTCTCTAATTGATGGCTGCACAGAAGCAGTGGAACTTGGAAGTCTGGATCCCAAGGGGCCCTTGTTGGACTTCTTTGGTGTCCCAGTGAAGGCAAATGATTTACTTACCCGTGTTCAAGAACTTCAAGTCCTAGCAAAGCGCATTAGTCGGTATGAAGATCCCATTGCACAGTTCCGCGTTTTAACATATCTTAAACCTTCAAACTGGTCAAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGAGTACATTATCATGGATTTGGCAATTGGGAAAAAATAAGATTAGATGAAAGACTAGGTCTTACAAAGAAAATTGCACCAGTGGAACTTCAACACCATGAAACTTTCTTGCCACGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTGTTGGAGCAAGAACTAGCTGCTCTTGGTGTGAAAAATGCCTGTAACAAAGTTGGAAGGAAGACTACCAAGAAAGAGAGAGAACATCTTGTGGACATCTCATTGTCACGCGGGCAGGAGAAAAGGAAAAAATTGGGCTCTTCTAAAGTTATTGTCCAAATGAGAAAGGATAGACATCAGAAACCTCTAAAAGTTGAACCTACTGTAAAAGAGGAGGGTGAAATGTCTGATGATGGGGAAGTATATGAGCAGTTCAAGGAAGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACCTTGAAACGGCTTCACAGGTTGCAGACAACCAGTGCTAATCTTCCTAAGGAAAAGGTGCTTTCAAAAATCCGCAACTACTTGCAGCTTCTTGGGCGAAGGATAGATCAAATTGTGTTAGAGCATGAAGAGGAACCCTACAAGCAAGATAGAATGACTATGCGATTGTGGAAGTATGTTTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTTCATCAAATTTATTCAAAACTTAAGCTGGAGCAAAATGTGGCCGGGGTTGGCCCCTCTCATGCCAATGGGTCAGCATCTGGTCCATTTAACAGGAATGGAAACCCTAACCATTCTTATCCATTCCCTCGTCAGATGGAGAGGCAAAGAGGATTAAAAAATGCGATGCCCTACCAAATGCCAGAACCCATCAATAACACAGGCATATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTAATGGTCAGTTCCAGGGTCAGCCACCACCTCAAAGAATCATGAGTAATGGAATTCAGATTATGGATCCTAATTCGCTGGGGATCCTTGGGGCTGGACCATCTGACAGACGTCTTGTTAGTGAGAAACCATTTAAGACTCGATCTGGTGGGTTTCCTTCAAGACAAGAATTCTCTTCAGGAATCGAGTAG 5280 0.4112 MAFFKNFSHDEVSHGVLEDKSQGQNADRIHRSIGNECADATSSEKEFDMNMEAQYESDGEPDGTSRLQKDATADDQVGTRESNIETTSRKTATVGRWGSSFWKDCQPMLPQNGSESGHESKSGSDYRNADESEDNSSEGRGERLDSEDDDGQKDSGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYRGFHQPTGSDSWPQRKSTVVNRRVHRKSRISDDAEDDDGDADYEEEDEADEDDPDDADFEPTTSGRAANKDKDWEGEDSDEADDCDEDIDVSDNDDSYFDKKGKGRQRGKVGRCARSTRDRKSNTSSSRQRRVQSSFQDEDDESTTEDSDSESDKDFKSLKKRGVHVRKNSGRSAAPTSYFMHNNEVRTSSRTVRKVSYVESEESEEADEGKKKSQKEEIEEDEGDSIEKVLWHQPKGMAAEAQRNNRSTEPVLMSHLFDFVPDWNEMEFLIKWKGQSHLHCQWKSFVELQNLSGFKKVLNYTKKVTEDIRYRMRISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEVTWEKDINIAFAQHAIDEYKAREAAMSVPGKMVDLQRKKSKESLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYNDKKAGRPIKFNALLTTYEVVLKDKVVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDSDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVDMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKLDRIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEVKKGGSYFDKNELSAILRFGAEELFKEERNEEESKKRLLSMDIDEILERAEKVEEKEDEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAVAQAEVALAPRAARNIKSYAEDNQSERSSKRKKKESELPERVQKRRKAEYSAPTTPMIDGATAQVRSWSYGNLSKRDALRFSRSVMKFGNESQIGLIAAEVGGAVGAAPLEAQIELFNSLIDGCTEAVELGSLDPKGPLLDFFGVPVKANDLLTRVQELQVLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGVHYHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAALGVKNACNKVGRKTTKKEREHLVDISLSRGQEKRKKLGSSKVIVQMRKDRHQKPLKVEPTVKEEGEMSDDGEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTMRLWKYVSTFSHLSGERLHQIYSKLKLEQNVAGVGPSHANGSASGPFNRNGNPNHSYPFPRQMERQRGLKNAMPYQMPEPINNTGISEAWKRRRRAESNGQFQGQPPPQRIMSNGIQIMDPNSLGILGAGPSDRRLVSEKPFKTRSGGFPSRQEFSSGIE. 1760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03196 1759 MobiDBLite consensus disorder prediction 265 283 - -
Seca6g03196 1759 CDD SF2_C_SNF 927 1061 - -
Seca6g03196 1759 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 940 1091 IPR001650 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 105 119 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 11 26 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 386 416 - -
Seca6g03196 1759 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 851 1081 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 62 76 - -
Seca6g03196 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 415 494 IPR000953 -
Seca6g03196 1759 SUPERFAMILY Chromo domain-like 412 495 IPR016197 -
Seca6g03196 1759 ProSiteProfiles Chromo and chromo shadow domain profile. 528 592 IPR000953 -
Seca6g03196 1759 Pfam Helicase conserved C-terminal domain 937 1050 IPR001650 -
Seca6g03196 1759 SUPERFAMILY Chromo domain-like 507 583 IPR016197 -
Seca6g03196 1759 Pfam Chromo (CHRromatin Organisation MOdifier) domain 529 583 IPR023780 -
Seca6g03196 1759 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 138 1642 - -
Seca6g03196 1759 SMART DUF4208_2 1519 1624 IPR025260 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 302 316 - -
Seca6g03196 1759 FunFam Photoperiod-independent early flowering 1 592 864 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 120 169 - -
Seca6g03196 1759 Gene3D - 401 528 - -
Seca6g03196 1759 Gene3D - 851 1081 IPR027417 -
Seca6g03196 1759 CDD CD1_tandem 413 493 - -
Seca6g03196 1759 SMART ultradead3 616 815 IPR014001 -
Seca6g03196 1759 Coils Coil 1134 1161 - -
Seca6g03196 1759 SMART helicmild6 966 1050 IPR001650 -
Seca6g03196 1759 Gene3D - 1347 1462 - -
Seca6g03196 1759 Gene3D - 611 850 IPR038718 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 189 207 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 1 416 - -
Seca6g03196 1759 Pfam SNF2-related domain 639 908 IPR000330 GO:0005524|GO:0140658
Seca6g03196 1759 MobiDBLite consensus disorder prediction 224 247 - -
Seca6g03196 1759 Pfam Domain of unknown function (DUF4208) 1531 1623 IPR025260 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 77 95 - -
Seca6g03196 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 844 1126 IPR027417 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 1211 1239 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 361 385 - -
Seca6g03196 1759 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 606 841 IPR027417 -
Seca6g03196 1759 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 632 804 IPR014001 -
Seca6g03196 1759 FunFam protein CHROMATIN REMODELING 5 isoform X2 530 582 - -
Seca6g03196 1759 CDD CD2_tandem 526 582 - -
Seca6g03196 1759 SMART chromo_7 413 496 IPR000953 -
Seca6g03196 1759 SMART chromo_7 526 585 IPR000953 -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 1209 1242 - -
Seca6g03196 1759 Gene3D - 530 582 - -
Seca6g03196 1759 MobiDBLite consensus disorder prediction 1729 1759 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03196 Seca-Chr6 98444074 98469587 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03196 642 1077 RAD5 or RAD16-like Gene Family AT1G02670 26.139 4.90e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g03196 SNF2_N 4.2e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03196 K11367 - gmx:100792398 2820.42