LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g03188	ATGACACAGTCAACACTACCTTCTCCTTCTTCCTTCACTTGTGATTGGACTTATGATGTCTTCCTCAACTTCAGAGGTGCGGATACCCGCAACAATTTCACTGGTAATCTCTATAACTCTCTGGATCAAAGGGGCATCCACACCTTCATCGATGATAAAGGGCTCAGGAAAGGCGAAGAAATCACACCAGCTCTTCTCAAAGCCATCAAAGAATCTAGGATTTTCATTGCTGTTTTCTCTAAGAACTATGCATCCTCAACTCATTGTTTGGATGAACTAGTCACCATCGTTGATTGTTTGAAGGCACCGGGACGGTTGTTTAGGCCAGTTTTTTATGATGTGGATCCATCACAAGTTCGGCACCAAACTGGGACTTATGCACAAGCTTTGGAAAAACATGAGGAGAGGTTCCATGATGACAAGGATAAGGTGCAAAAATGGAGGGATGCTTTACATCAAGCTGCTAATTTCTCTGGCTGGCATTTCCAACACGGGTCTCAACCAGAATATGAGTTTATTGGAAAAATCGTTGAAGAGGTCTCTAAAAGAATCAACCGCACCCCTTTACATGTTGCTGACAAACCAGTTGGGCTGGAGCCTTCAGTGTTAGAAGTGATATCTCTGCTTGGACTCGAGTCTAATGAGAGAATCAACATGGTAGGCATTTATGGAATCGGTGGAATTGGTAAATCAACAATTGCTCGTGCTGTGTATAACTTGATTGCGGATCAATTTGAAGGTTTGTGTTTTCTTGCTGATGTAAGAGTAAGGGCAATTAATCAAGGTCTTGCACAACTCCAAGAAACACTACTTTCAGAAGTACTTGGGGAGAAAGATATCAAAGTGGGAGATGTTTACAGGGGAATTCCAATAATAAGAAAAAGGCTCCAAGGAAAGAAGGTGCTTTTGATTCTTGATGATGTTAACAAATTGAAGCAATTGCAGGTACTTGCAGGAGGGGAAGATTGGTTTGGCTTTGGCAGCAAGATCATAATCACAACAAGAGACAAACATTTGCTGGCCACTCATGGGGTAGTGAAGTTATATGAGGTTAAACAGTTAGATTTTCGAAATGCTCTTGAATTGTTTAGTTGGCACGCCTTTAGAAATAACAAAATTGATCCAAGCTATGCACATATTTCGAACCATGCAGTCTTGTATACTCGTTGCCTTCCATTGGCTTTGGAGGTGGTAGGTTCTCTCTTGTTTGGCAGAAGTTTAGCTGTATGGGAATCTTCATTAAATAAATTTGAAAGAATGCTCCGTACAGAGATCCATGAAATACTTAAAGTTAGCTATGATGATTTGGAAACCGATGAGAAGGGTATTTTTCTTGATATAGCTTGTTTTTTCAATTCTTACCAAATGAGTTATGTCAAGGAAATCCTATACTTACATGGTTTCATTAATATGGAAAATGGCATTCAAGTGCTGATTGACAAATCTCTGATAAAAATTGATGGCAATGGTTGTGTGAGAATGCATGACTTAATTCAAGACATGGGCAGACAAATCGTAACGCAGGAATCAGAGTTTGAGCCTGGCAGACGCAGTAGATTATGGTTTAGTAAGGACATTGTTCATGTTTTGGAAGAAAATACGGGAACTGATGCAATTCAAGTCATAATTATGGACTCGTGCAAAGACATAGAAGTGCAGTGGAGTGGAAAAGCTTTCAAGAAGATGAAAAACCTGAGAATTCTTATAATTAGAAATGCTCGCTTTTCAAGAGGCCCTGAAAATCTACCAAATAGTCTGAGAGTTATAGACTGGAGTGGATATCCATCACCCTCTTTACCAACTAATTTTAATCCCAAGAATCTTGTGATACTTAGCCTGCCTGAAAGTTGCCTTAAATCGTTCAAACCACTCAAGATGTTTGAATCCTTGAGCTTCATGGATTTTGAAGACTGCAAATTCTTAACTGAACTACCTAGCTTGTCCGGACTACCAAATTTAGGAGCACTGTGTCTTGATAATTGCTCTAAATTAATTAGGATTCATGGCTCGGTTGGGTTCCTTGATAGACTCATATTATTGAGTGCTCAAAGATGCACTCAGCTAGAAATGCTGGTACCCTACATCAATTTACCATCTTTAGAGACTCTGGACCTAAAGGGTTGCTCAAGTCTTAAGAGCTTCCCAGAAGTATTGGGAGTGATGGAGAATATAAGAGATGTTTATTTAGACCAGACTCCTATAGATGAATTGCCATTCTCAATTGGAAATCTTGTTGGTCTCAAACGATTATTCTTGCGGGAATGCCCAAGGCTGATTCAGTTACCAAGTAATATCCATATATTGCCTAAACTTGAGATAATAATGGCTTATGATTGTAGGGGATTTCGGTTATTTGAGGATAAAGAAAAAGTGAGGCCAGAAGTATTTCCAAAAGCCATGCTTGTTTATACTGAAGGCAGGGAGATCTTACTTGATGTGTGTTCTCTTAACATATGCCCCAATAATGTCACAGAAGTATGGAGAGTAAATTGGTACAAGCTTGAAAGCAAGCTTGAGGGTAGTTATTTTGGATTTGTGCTTAAAGGGATTCTAGAAGGGAGAGTAAATTGGTACAAGCTTGGAAGCAAGGAATCATCAATGAGTTTTTGGTTCCGAAAGAAATTCCCCCAGATAGCTCTATGTTGTGCTGGAGAACCTCAACCTAGCATATGTAAAAACAACATGGTGTTGGATTTCAAATTCAGTGTACTCATCAATGGCAATAAGCAATTCAGTTCTTCATGTAACTACATATTCTCTACACAAAGAATGAGAGACCAAATACTTTTGTGTGATCTACTATGCAGAGTAGAGAGGGCATTTTCAGAGCATGAATGGAATAAAGTAGAGATTTTATGTGAGTTGAAATACCTCATGCCATGTGGCTCGGAAAGAGAAATGGCCATCCGGGATGGAACCTCAATGATTCCAAGTTGGTCCCTCATTTATGTGTACGAAGAAAACGCGGAGGATACCAAATTTCTGTCCCCTGTCCAGGAATGTAAAGAAGCGCAGAGAAGAAAGGAAACGCTACTGGCCTTTCACACCATGCTCAAGCGTCGTGCATCTAAGGGATTTTCTATTTTTCTAACTACACCCTCCCCCTTCTTTTTTAAAGAATAA	3123	0.3964	MTQSTLPSPSSFTCDWTYDVFLNFRGADTRNNFTGNLYNSLDQRGIHTFIDDKGLRKGEEITPALLKAIKESRIFIAVFSKNYASSTHCLDELVTIVDCLKAPGRLFRPVFYDVDPSQVRHQTGTYAQALEKHEERFHDDKDKVQKWRDALHQAANFSGWHFQHGSQPEYEFIGKIVEEVSKRINRTPLHVADKPVGLEPSVLEVISLLGLESNERINMVGIYGIGGIGKSTIARAVYNLIADQFEGLCFLADVRVRAINQGLAQLQETLLSEVLGEKDIKVGDVYRGIPIIRKRLQGKKVLLILDDVNKLKQLQVLAGGEDWFGFGSKIIITTRDKHLLATHGVVKLYEVKQLDFRNALELFSWHAFRNNKIDPSYAHISNHAVLYTRCLPLALEVVGSLLFGRSLAVWESSLNKFERMLRTEIHEILKVSYDDLETDEKGIFLDIACFFNSYQMSYVKEILYLHGFINMENGIQVLIDKSLIKIDGNGCVRMHDLIQDMGRQIVTQESEFEPGRRSRLWFSKDIVHVLEENTGTDAIQVIIMDSCKDIEVQWSGKAFKKMKNLRILIIRNARFSRGPENLPNSLRVIDWSGYPSPSLPTNFNPKNLVILSLPESCLKSFKPLKMFESLSFMDFEDCKFLTELPSLSGLPNLGALCLDNCSKLIRIHGSVGFLDRLILLSAQRCTQLEMLVPYINLPSLETLDLKGCSSLKSFPEVLGVMENIRDVYLDQTPIDELPFSIGNLVGLKRLFLRECPRLIQLPSNIHILPKLEIIMAYDCRGFRLFEDKEKVRPEVFPKAMLVYTEGREILLDVCSLNICPNNVTEVWRVNWYKLESKLEGSYFGFVLKGILEGRVNWYKLGSKESSMSFWFRKKFPQIALCCAGEPQPSICKNNMVLDFKFSVLINGNKQFSSSCNYIFSTQRMRDQILLCDLLCRVERAFSEHEWNKVEILCELKYLMPCGSEREMAIRDGTSMIPSWSLIYVYEENAEDTKFLSPVQECKEAQRRKETLLAFHTMLKRRASKGFSIFLTTPSPFFFKE.	1041

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g03188	1040	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	160	IPR035897	-
	Seca6g03188	1040	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	182	447	IPR027417	-
	Seca6g03188	1040	ProSiteProfiles	TIR domain profile.	16	184	IPR000157	GO:0007165
	Seca6g03188	1040	SUPERFAMILY	L domain-like	544	833	-	-
	Seca6g03188	1040	SMART	till_3	17	157	IPR000157	GO:0007165
	Seca6g03188	1040	Gene3D	-	354	437	IPR042197	-
	Seca6g03188	1040	Gene3D	Ribonuclease Inhibitor	696	798	IPR032675	-
	Seca6g03188	1040	Gene3D	Ribonuclease Inhibitor	546	695	IPR032675	-
	Seca6g03188	1040	PRINTS	Disease resistance protein signature	219	234	-	-
	Seca6g03188	1040	PRINTS	Disease resistance protein signature	388	402	-	-
	Seca6g03188	1040	PRINTS	Disease resistance protein signature	695	711	-	-
	Seca6g03188	1040	PRINTS	Disease resistance protein signature	295	309	-	-
	Seca6g03188	1040	FunFam	Disease resistance protein (TIR-NBS-LRR class)	14	186	-	-
	Seca6g03188	1040	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	18	791	IPR044974	GO:0006952
	Seca6g03188	1040	Pfam	TIR domain	18	187	IPR000157	GO:0007165
	Seca6g03188	1040	SUPERFAMILY	"Winged helix" DNA-binding domain	423	531	IPR036390	-
	Seca6g03188	1040	Gene3D	-	182	347	IPR027417	-
	Seca6g03188	1040	Gene3D	-	14	181	IPR035897	-
	Seca6g03188	1040	Pfam	NB-ARC domain	211	434	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g03188	Seca-Chr6	98359219	98363050	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g03188	12	790	WRKY Transcription Factor Family	AT4G12020	32.919	1.36e-97	338

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g03188	-		-	mtr:11440666	1395.18