Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03180 ATGAACAACAGTGTTCCTGATTGGAATTTTGGGAGTGATACCTGTGTCACCAATCAAAAGAAGCTCATGGGGCAGGACCATGAACTTATGGAGCTCCTATGGCAAAATGGCCAGGTAGTATTGCACAGCCAAACACATAGGAAACCAGTTGTGAATTCAATCCCCTCAAGACAGGTTCAGAAAAATTTTCAATCAACATTAAGGACTAGTGAGCCATTTGGGAACTCAAGTAACTTGATTCAAGATGATGAGACAGTCTCATGGATCCAATACCCTCTTGAGGATCCATTGGAACAAGAATTATGTTCAAACCTTTTATCTGAACTGCCACCATGTGAAGTTGAGTCTTATAAGCAATTCAAGCAGTTTGAAGAGGGAAAGTTTTCCAAATTGGATGCTTCTAGTGCTCCCCATGTGACTGTAAGTTCACAACCACCTAACATGAAACCCTCCTTTGTTCAGGAGTTCTCAGGAATTCCTATGCCTGCTCCAAGATTTCATGTTTCTGATTCATCTCAGAAAAACAATGACTTGGGTGGATCACACAAGGTCTTAAACTTTTCTCACTTTTCAGCACTCCCTAATGTTTCTTCAGCATCTGCTAATCCCCATTTTAGAGACAAAATCACTGGTAATCTGTCAAAAGGTGAGATTAGAGAGTGCTCAGTGATGACAGTTGGTTCAAGCTTTTGTGGCAGTAATCACATCCCTCAAGATCCAGATGTAAGCAGGGCTTCAAGCAATGGTGTTTGGACTGCTAATTTATCTGCTGAGCCTGAAGCTGTAAGAGATGATGTCCAGAGAACAAATCCTCAGAGTGAGAAAGGGAAACCAGAGATGCTTGAACCAACTGTGACTTCATCTTCTGGTGGCTCAGGTAGTAGTCTTGGAAAAACATGTTCCTTATCTACAAGAAACCAGGGCCAAAAAAGGAAAGGAATAGATGTGGAAGAATCAGAAGAACAAAGTGAGGACACAGAACTCAAATCAGCTGTTGGAAATAAGGCATCTCAGAGATCAGGGTCAGCCAGAAGGAACCGTGCTGCTGAAGTGCATAATCTTTCAGAAAGGAGAAGAAGAGATAGGATCAATGAGAAGATGAGGGCATTGCAACAACTCATACCTCACAGTAGCAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAATTACAACTTCAGGTAATGTGGATGGGATCTGGCATGGCACCAATGATGTTTCCAGGAATTCAGCACTATATGTCACAAATGGGCATGGGAATGGCTACACCTTTTCCTCCTGTTCACAATCCTATGCAATTACCAAGAGTGCCACTTGATCAGTCCATGTCTGCTTCACAGTCACCAAACCAGACATTAATGTCCCAACCTCCTATTTTAGGTGCCTTTAATTACCAAAATCAGATACAAAATCCAGCTCTTTCAGAGCAATATGCTCGTTACATGGGCTATCATCTTATGCAAAATGCCTCTCAGCCAATGAATATGTACAGATATGGTCCCCAGTCAGTACAACATGGTCAAACAATGATTCCATCCAGCAATAGCAGTGGACCTATGAGTGGAGCAGCTAATATTGATGATACTGTGAGTGGCAAAATGGGTTAA 1629 0.418 MNNSVPDWNFGSDTCVTNQKKLMGQDHELMELLWQNGQVVLHSQTHRKPVVNSIPSRQVQKNFQSTLRTSEPFGNSSNLIQDDETVSWIQYPLEDPLEQELCSNLLSELPPCEVESYKQFKQFEEGKFSKLDASSAPHVTVSSQPPNMKPSFVQEFSGIPMPAPRFHVSDSSQKNNDLGGSHKVLNFSHFSALPNVSSASANPHFRDKITGNLSKGEIRECSVMTVGSSFCGSNHIPQDPDVSRASSNGVWTANLSAEPEAVRDDVQRTNPQSEKGKPEMLEPTVTSSSGGSGSSLGKTCSLSTRNQGQKRKGIDVEESEEQSEDTELKSAVGNKASQRSGSARRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSSKTDKASMLEEAIEYLKSLQLQLQVMWMGSGMAPMMFPGIQHYMSQMGMGMATPFPPVHNPMQLPRVPLDQSMSASQSPNQTLMSQPPILGAFNYQNQIQNPALSEQYARYMGYHLMQNASQPMNMYRYGPQSVQHGQTMIPSSNSSGPMSGAANIDDTVSGKMG. 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03180 542 MobiDBLite consensus disorder prediction 256 351 - -
Seca6g03180 542 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 345 411 IPR036638 GO:0046983
Seca6g03180 542 Gene3D - 342 403 IPR036638 GO:0046983
Seca6g03180 542 MobiDBLite consensus disorder prediction 329 344 - -
Seca6g03180 542 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 347 396 IPR011598 GO:0046983
Seca6g03180 542 FunFam Basic helix-loop-helix transcription factor 342 405 - -
Seca6g03180 542 PANTHER TRANSCRIPTION FACTOR PIF3 17 512 IPR044273 GO:0003700|GO:0006355
Seca6g03180 542 CDD bHLH_AtPIF_like 347 410 IPR047265 -
Seca6g03180 542 Pfam Helix-loop-helix DNA-binding domain 351 397 IPR011598 GO:0046983
Seca6g03180 542 MobiDBLite consensus disorder prediction 518 542 - -
Seca6g03180 542 SMART finulus 353 402 IPR011598 GO:0046983
Seca6g03180 542 MobiDBLite consensus disorder prediction 282 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03180 Seca-Chr6 98267799 98274146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03180 8 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.196 4.20e-61 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g03180 HLH 4.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03180 K16189 - gmx:100784531 900.582