Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03169 ATGAAGAATAATTCAAATAGGATTGGCGTAAGGAAGTACCAGAAATCTGAACATCCACGCCTTCGGTGGACACCTGAGCTCCATCAATATTTTGTTCAAACTGTTGAAAACTTAGGTGGAAAACATAAGGCAACTCCAAAGCGCATTTTGCAGATGATGTATGTGAAAGGGCTCAGGATCTCACACATTAAAAGCCATCTTCAGATGTACAGGAATATGAAGAAGGGACATACGATTCTGGAACCAATGTATGATCAGTTGATGGAAGAAAATATTGCACAAGTTAACCATCTCCCTGCAGTCTGCTCCAATTGCTCGCCCCAAAGATCAGTGGGAACTAAATTAAGAGTATCAAAACATGCTGCGAGGATTATCAATCAAGAACTTCATCCGTTAGACAATATAGGACTTTCACAAACCAGTGAAACTGATTATGATCTAAATCAGGAGCCTGATGACTCAAGTGCGTGCTTACTTAGTGACATGTCAAATGAAGAAGAAAATACTATGACCATGAAATTTCTAGATCTCCCATTGTCTTTGAGTAACATTCCAATGATGCATGGAGACCCAGAGAGAACGCGTCTTTCCTCACCAAATACAGCAGATAATAATGTTGTTGATTCTAGTTCTATACAGTCGCATGGCAGCAATTATATAAATTTAGACCTAGCTATTTGA 681 0.3906 MKNNSNRIGVRKYQKSEHPRLRWTPELHQYFVQTVENLGGKHKATPKRILQMMYVKGLRISHIKSHLQMYRNMKKGHTILEPMYDQLMEENIAQVNHLPAVCSNCSPQRSVGTKLRVSKHAARIINQELHPLDNIGLSQTSETDYDLNQEPDDSSACLLSDMSNEEENTMTMKFLDLPLSLSNIPMMHGDPERTRLSSPNTADNNVVDSSSIQSHGSNYINLDLAI. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03169 226 MobiDBLite consensus disorder prediction 190 211 - -
Seca6g03169 226 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Seca6g03169 226 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 73 IPR006447 GO:0003677
Seca6g03169 226 Gene3D - 18 75 - -
Seca6g03169 226 SUPERFAMILY Homeodomain-like 17 75 IPR009057 -
Seca6g03169 226 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Seca6g03169 226 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 3 128 IPR046955 GO:0003700
Seca6g03169 226 MobiDBLite consensus disorder prediction 194 211 - -
Seca6g03169 226 FunFam Two-component response regulator 14 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03169 Seca-Chr6 98134809 98139475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03169 9 74 G2-like Transcription Factor Family AT1G14600 65.152 2.62e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g03169 Myb_DNA-binding 3.1e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03169 - - ccaj:109790621 276.944