Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03166 ATGTCTTACCTCATCAACTCTTGTGGGTTGTCCCCAAAGTTGGCTAAGGAACTCTCCAAAAGGGTGAATCTGAGAAACCCAAATGGCCCAAATGCTGTTCTTGATCTTCTCAAGAACTATGGGTTCTCCGAAACCCAGATTGTAAAACTTTTGAAGAAACATCCATTGTTCCTCGTTGCAAATGTTGAGAATATCCTTTTGCCTAAGTTCAAGTTCTTACATTCTATTGGGGTTTCTACCAGTGACATGCCAAAGATCCTAATTGGTAACCATTTTTTCTTGTTGAGGAGCTTGGAGAAATGCATTATCCCACGTTATGAGATCCTCAGGAGTGTAGTTAGTAATGATCAGGAAGCTGCTAGAGCTTTGAGAAGTGCCCAACGTTCTTTCACATTTTGTGATTTGGTGAATGTCTTGGTTCCAAACATTGAGGTTTTGAGACAATCTGGTGTGCCTCAAACTTCCATTTCTTTCATGATGATGAATTGTGCCACTGCAGTATATATGAAACATTCCAGATTTGTGAAAGCTGTCAAAAAAGTTGAGGAAATTGGGTGTGATCCTTTGAAAACATCTTTTGTCATGGCTGTCCAAGTGCTTTTAACTATGAGAAAAGCAGTGTGGGAATCCAGATTTAAGGTTTATGAGAGATGGGGCTGGAACCGTGAAATGACTCTTAGAGCATTTAGAAAGTTTCCCAATTTTATGAAGTTGTCAGAGGAGAATTTTACAAAGAAAATGACTTTCCTAGTGAATGATATGGGTTGGCCATCAGAACATATTGCTGAATTTCCTCCAGCTCTGGCCTTCAACTTGGAGAAGAGGATTATCCCTAGACTCTCAGTAATTAAAATCTTGAAATCAAAAGGTCTGATTAAGAATATTTTGCACGTAGGTACCATTATGTGCATAAATGAGGAAAGTTTTTTTAAGAGATTTGTCATCAATTTTCAGGAAGATATTCCTTTCTTACCAGATGTTTACAATGTGTTAAGCCTCATCAACTCATCTGGGTTGTCCCCTGAAATGACCCTTAAACTCTCCAAAAGGTTGCACCGGAAAACCCCAGATGGGCCAAATGCTGTGGTTGAACATCTCAGGAACTATGGGTTCTCTGATACCCAGTTGTCTAGCCTTGTAAAGAAACTGCCTTTGGTGCTTTTAGCAAAACCTGACAACACCCTTTTGCCAAAACTCAAGTTTCTCCATTCTATTGGGGTTTCAACCACTGACTTCCCTAGAATCCTCCTTGGAAACACTTCATTATTGACAGCAAGCTTGAAGAAAACCCTCATCCCTCATTATGAAATCATTAGGAGTATAGTTCGCAATGATAAGGAGGTAGTTACAATTTTGAAGCGTGGGCTATGGCACTTTATCTCACCTAAGGTCCTAAGTGAAGCAGTTCCTAACATAGAGGTTTTGAGACAGCTTGGCCTGCCTCAAGATTCTATTTCCCTCTTGGTAACCAATTTTCCTAGTGTAGCATTTATGAAGCATTCCAGATTTGTTGAGGCTGTCAACACAGTGAAGGAAATGGGGTTTGATCCGTTGAAGTCAAATTTTGTTTTGGCACTTCAAGTAGTTGCAAAGATGAATAAAGCAACGTTGAAATCGAAATTAGAGTTTTTTGAGAGATGGGGATGGTCCAAAGATATCTGTCATTTAGCTTTTAAAAAATATCCCCAGTATGTTATGATATCAGAAAAGAAGATTTTGAAAGCACTAACCTTCTTGATGAAGGAAGGTTTTCCCCTTGAAGACATTGCTAGAAGCCCTGGGATTCTGAACCGCAACTTGGAGAAGACATTGATCCCTAGATGTACAGTTGTTAAAATTTTGAAGTCAAGGGGTTTGATAAAGAGTGATTTGCGCACATATACCTTTATTTGCATTAGTGAGAAAATATTTTTGGAGAGATATGTGACACGGTTTCAGAAAAATGTGCCACGATTATTGGATGCATACAAAGGTCAGAAGTTAGATTGA 1989 0.3906 MSYLINSCGLSPKLAKELSKRVNLRNPNGPNAVLDLLKNYGFSETQIVKLLKKHPLFLVANVENILLPKFKFLHSIGVSTSDMPKILIGNHFFLLRSLEKCIIPRYEILRSVVSNDQEAARALRSAQRSFTFCDLVNVLVPNIEVLRQSGVPQTSISFMMMNCATAVYMKHSRFVKAVKKVEEIGCDPLKTSFVMAVQVLLTMRKAVWESRFKVYERWGWNREMTLRAFRKFPNFMKLSEENFTKKMTFLVNDMGWPSEHIAEFPPALAFNLEKRIIPRLSVIKILKSKGLIKNILHVGTIMCINEESFFKRFVINFQEDIPFLPDVYNVLSLINSSGLSPEMTLKLSKRLHRKTPDGPNAVVEHLRNYGFSDTQLSSLVKKLPLVLLAKPDNTLLPKLKFLHSIGVSTTDFPRILLGNTSLLTASLKKTLIPHYEIIRSIVRNDKEVVTILKRGLWHFISPKVLSEAVPNIEVLRQLGLPQDSISLLVTNFPSVAFMKHSRFVEAVNTVKEMGFDPLKSNFVLALQVVAKMNKATLKSKLEFFERWGWSKDICHLAFKKYPQYVMISEKKILKALTFLMKEGFPLEDIARSPGILNRNLEKTLIPRCTVVKILKSRGLIKSDLRTYTFICISEKIFLERYVTRFQKNVPRLLDAYKGQKLD. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03166 662 SMART mt_12 226 257 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 413 444 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 258 292 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 555 585 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 377 408 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 586 620 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 84 115 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 48 79 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 520 550 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 486 516 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 SMART mt_12 191 221 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 FunFam Mitochondrial transcription termination factor-like 98 321 - -
Seca6g03166 662 PANTHER CGI-12 PROTEIN-RELATED 1 315 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 FunFam Mitochondrial transcription termination factor-like 427 649 - -
Seca6g03166 662 Pfam mTERF 205 306 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 Pfam mTERF 364 584 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 Pfam mTERF 34 242 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 Pfam mTERF 531 626 IPR003690 GO:0003690|GO:0006355
Seca6g03166 662 Gene3D Transcription termination factor 3, mitochondrial 334 461 IPR038538 -
Seca6g03166 662 Gene3D Transcription termination factor 3, mitochondrial 462 649 IPR038538 -
Seca6g03166 662 Gene3D Transcription termination factor 3, mitochondrial 114 320 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03166 Seca-Chr6 98094575 98102113 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Seca6g03166 mTERF 5.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03166 K15032 - gmx:100786641 456.062