Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03154 ATGAATATAAATATATGTAGAGACGAGGGGGGTTATTTACACAGCATGAGAAGCTTCCTATCAGTTTTAAGTCTATACAGAGAAAAAAAAATGGAGGATGTGACTAAATTACATGGCTCTGATGATAAGAAGGAGGAAAAAGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCCACAGATGAAGAGCTTGTTGGGTTTTATCTGCAGAGAAAAGTGGAGAAAAAGCCTCTTCGAATTGAACTCATTAAACAAGTTGACATCTACAAATACGACCCATGGGATCTTCCAAAAGTGAACTCTTTGGGGGAGAAGGAGAAGGAATGGTACTTTTTCTGTATAAGAGGGAGAAAATACAAGAACAGCATAAGGCCAAACAGGGTAACAAGGTCAGGGTTCTGGAAAGCCACAGGGATTGACAAGTCCATATATTGTGTGAAAGAGCCTCATCAATGCATTGGCCTCAAGAAGTCATTGGTTTACTACAGAGGAAGTGCTGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCACCCAATGCTAATGCTATCAATGACGTTCAACAAGCTGTAAGTCAATTATCTACACACATATATGAGGAGGTGTGGACACTATGCAGGATATTCAAACGCATCCCATCTTACAAAAAGTACACTCCAAATTTGAAAGACTCAGCACAACCTCTCACCAAATTACCACCAGATGATTCTAACACATGCAGCTTAGACTCTGACAATTGCAACCCATACTTGAATATTTCCAGAGACCCTTTATTGATGCAACAAATTGAAAGGAAACCCCTTATTGAAGATGAAAAGAAACACTTGTTTCTAGGCCAATTTGGATCTCATCAGGCTCCATCAACCCTGTCTTACCCTAATTGTTGGAATCAGAATGTTGTTGAGGATGCAACAATATTTGCAAATAACAACTGGGATGACCTAAGATCTGTGGTTCAGTTTGCCATTGATCCATCCACCGTTTATGATTGTACAGAGACACATATACCACCCTTTTTTTCTTAG 1035 0.399 MNINICRDEGGYLHSMRSFLSVLSLYREKKMEDVTKLHGSDDKKEEKEVVLPGFRFHPTDEELVGFYLQRKVEKKPLRIELIKQVDIYKYDPWDLPKVNSLGEKEKEWYFFCIRGRKYKNSIRPNRVTRSGFWKATGIDKSIYCVKEPHQCIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNANAINDVQQAVSQLSTHIYEEVWTLCRIFKRIPSYKKYTPNLKDSAQPLTKLPPDDSNTCSLDSDNCNPYLNISRDPLLMQQIERKPLIEDEKKHLFLGQFGSHQAPSTLSYPNCWNQNVVEDATIFANNNWDDLRSVVQFAIDPSTVYDCTETHIPPFFS. 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03154 344 Gene3D NAC domain 59 217 IPR036093 GO:0003677|GO:0006355
Seca6g03154 344 FunFam NAC domain-containing protein 35 59 217 - -
Seca6g03154 344 SUPERFAMILY NAC domain 49 213 IPR036093 GO:0003677|GO:0006355
Seca6g03154 344 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 48 258 - -
Seca6g03154 344 Pfam No apical meristem (NAM) protein 52 180 IPR003441 GO:0003677|GO:0006355
Seca6g03154 344 ProSiteProfiles NAC domain profile. 50 214 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03154 Seca-Chr6 97953470 97957855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03154 40 214 NAC Transcription Factor Family AT5G39820 56.757 4.89e-69 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g03154 NAM 2.6e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03154 - - gmx:100819795 493.426