Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03145 ATGTTGAAACAGTATCACCAGTACCAGGTTGTGGGGAGAGCTCTTCCTACTGAAAATGATGAACATCCTAAGATCTACAGGATGAAGCTTTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTACTTCTTGAGAAAGCTAAAGAAGGTTAAGAAAAGCAATGGGCAAGTGCTGGCCATCAACGAGATTTTTGAGAAAAATCCTACCAAGATTAAGAATTATGGAATTTGGCTCCGTTATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGAGATACTACTCTAAATGGTGCTGTTGAACAAATGTACAATGAAATGGCATCTCGTCATAGAGTCAGGAGTCCATGCATCCAGATCATTAAGACTGCCACCATCCCAGCTAAACTCTGCAAAAGGGAGAGCACCAAGCAGTTCCATGACTCTAAAATTAAGTTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTCAAGACAACATACAAGGCATCCAGGCCCAACCTGTTTATGTAA 534 0.4326 MLKQYHQYQVVGRALPTENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYNEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03145 177 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 6 127 IPR023573 GO:0003735|GO:0005840|GO:0006412
Seca6g03145 177 SUPERFAMILY RplX-like 70 145 - -
Seca6g03145 177 Gene3D - 1 70 - -
Seca6g03145 177 PANTHER 60S RIBOSOMAL PROTEIN L18A 5 176 IPR028877 -
Seca6g03145 177 Hamap 50S ribosomal protein L18Ae [rpl18a]. 5 68 IPR028877 -
Seca6g03145 177 Gene3D - 71 146 - -
Seca6g03145 177 PIRSF Ribosomal_L18a 1 177 IPR021138 GO:0003735|GO:0005840|GO:0006412
Seca6g03145 177 FunFam 60S ribosomal protein L18a 71 146 - -
Seca6g03145 177 FunFam 60S ribosomal protein L18a 1 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03145 Seca-Chr6 97827170 97828534 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03145 4 177 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 90.230 7.63e-120 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03145 K02882 K22683 pop:7468726 353.984