Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03143 ATGAAGCTTTGGGCCACCAATGAGGTCCGTGCCAAATCCAAGTTCTGGTATATTTTTGAGAAAAATCCTACCAAGATTAAGAATTATGGAATTTGGCTGCGATATCAGAGCCGAACTGGTTATCACAACATGTACAAGGAATACCGTGACACTACTCTAAATGGTGCTATTGAACAAATGTACAATGAAATGGCATCACGTCATAGAGTCAGGAATCCATGCATCCAGATCATTAAGACTGCCACCATCCCAGCTAAACTTTGCAAAAGGGAGAGCACCAAGCAGTTCCATGACTCTAAAATCAAGTTCCCATTGGTGTTCAAGAAGGTTAGGCCCCCAACTAGGAAGCTCAAGACAACATACAAGGCATCCAGGCCAAACCTGTTTATGTAA 393 0.4249 MKLWATNEVRAKSKFWYIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAIEQMYNEMASRHRVRNPCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM. 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03143 130 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 1 80 IPR023573 GO:0003735|GO:0005840|GO:0006412
Seca6g03143 130 Gene3D - 29 99 - -
Seca6g03143 130 PANTHER 60S RIBOSOMAL PROTEIN L18A 1 17 IPR028877 -
Seca6g03143 130 SUPERFAMILY RplX-like 23 98 - -
Seca6g03143 130 FunFam 60S ribosomal protein L18a 24 99 - -
Seca6g03143 130 Gene3D - 1 28 - -
Seca6g03143 130 PIRSF Ribosomal_L18a 1 22 IPR021138 GO:0003735|GO:0005840|GO:0006412
Seca6g03143 130 PIRSF Ribosomal_L18a 17 130 IPR021138 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03143 Seca-Chr6 97818160 97819496 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03143 1 130 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 78.667 1.94e-84 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03143 K02882 K22683 pop:7468726 257.299