Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03122 ATGCAGCAAGATCACAGGAAAAAGAGTTCAACAGAGATGGATTTTTTCTCTGAATATGGTGATGCCAACCGGTACAAAATTCAAGAGGTCATTGGTAAAGGAAGTTATGGTGTTGTCTGTTCAGCCATTGACACTCATACCGGTGAAAAAGTGGCAATTAAGAAGATTCATGACATCTTTGAGCACATATCTGATGCTGCACGTATTCTCCGTGAGATAAAGCTGCTTAGACTCCTACGACATCCTGATATTGTTGAAATAAAACATATTATGCTGCCTCCTTCTAGAAAGGACTTCAAAGATATTTACGTTGTTTTTGAGCTCATGGAGTCTGACCTCCATCAAGTCATTAAAGCCAATGATGACTTAACAAAAGAGCACTATCAGTTTTTTCTTTATCAATTACTTCGAGCACTGAAGTATATTCACACTGCAAATGTATATCATCGAGATTTGAAGCCAAAGAATATACTGGCAAATGCGAACTGTAAACTTAAAATCTGTGATTTTGGATTAGCTAGAGTTGCCTTCAGTGACACACCAACAACTATATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCTCCAGAGCTATGTGGATCATTTTACTCGAAGTATACACCAGCGATTGATATATGGAGTATAGGTTGCATCTTTGCTGAAGTACTAACAGGAAAGCCACTTTTTCCTGGAAAAAATGTAGTCCATCAGTTGGATCTGATGACAGATCTGCTTGGGACTCCCTCACTGGATACTATATCACGGGTTCGCAATGAGAAGGCAAGGAGATACCTAACTAGCATGAGGAAAAAACAGCCTGTTCCATTTGCACAAAAATTTCCAAATGCAGACCCTTTGGCACTACGACTGCTGGAAAGGTTGCTGGCTTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTGGCTGATCCTTACTTCAAGGGATTGGCAAAAGTTGAAAGGGAACCATCCTGCCAGCCTATCACAAAAATGGAGTTTGAATTTGAAAGACGAAGAGTCACAAAGGAAGAAATTCGAGAGTTAATTTTCCGCGAGATTCTGGAGTATCATCCTCAACTGTTGAAAGACTACATGAATGGAACAGAGAGAACTAATTTTCTTTATCCAAGTGCTGTTGATCAATTCAGAAAGCAGTTTGCTCATCTAGAGGAAAATGGTAAAAATGGTCCTGTTATGCCTCTTGATAGAAAGCATGTTTCTCTTCCAAGGCCAACAATTGTACACTCAAATACAGTACACCAAAAAGAGCAAACCAATGTTGCTTCCAGCAAAAACCGGCCAACAGCTGATGAATATAATAAGAACACCAGAGATACAGAAAATCCAATGCCAAGATCTATGCAGGGACCACAAAGAATTCCATTAGCAAAACCTGGTAAAGTTGTTGGGCCTGTTGTTCCATACGAGTATGGGAGTGTTGTCAAGGATTCTTATGATCCAAGGACATTTATCAGAGGTTCTATGGTTCCTTCTCAAACTATACACCCAGCATATTATTATCAAAGGCCTAGCACTGGAAATCAAGAAAGGCTAGCAACGGAAACTGATAAGGGTGTGCCTTTGCAAGCAAAGCATGCACAGCAATGTGGAGTTAATGCCAAAATAGCACCAGATATAGCAATTAATATTGATACAAATCCCTTTTTTATGACAAGGGCAGGAGTGAACAAGTTAGAACAAGATGACCAAATTGCCATAGAAACAAACTTGTTGCAGTCAAAGGCTCAATATGGTGGAATTAGTGCTGCAGCTGGGGCCACTGCTCATAGAAAGGTTGGGCCTATTCAGTATGGTATGGCAAGGATGTTCTAG 1842 0.4028 MQQDHRKKSSTEMDFFSEYGDANRYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRKDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFYSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPVPFAQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIRELIFREILEYHPQLLKDYMNGTERTNFLYPSAVDQFRKQFAHLEENGKNGPVMPLDRKHVSLPRPTIVHSNTVHQKEQTNVASSKNRPTADEYNKNTRDTENPMPRSMQGPQRIPLAKPGKVVGPVVPYEYGSVVKDSYDPRTFIRGSMVPSQTIHPAYYYQRPSTGNQERLATETDKGVPLQAKHAQQCGVNAKIAPDIAINIDTNPFFMTRAGVNKLEQDDQIAIETNLLQSKAQYGGISAAAGATAHRKVGPIQYGMARMF. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03122 613 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03122 613 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Seca6g03122 613 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Seca6g03122 613 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Seca6g03122 613 MobiDBLite consensus disorder prediction 420 468 - -
Seca6g03122 613 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Seca6g03122 613 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 373 - -
Seca6g03122 613 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Seca6g03122 613 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03122 613 FunFam Mitogen-activated protein kinase 111 339 - -
Seca6g03122 613 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03122 613 CDD STKc_TDY_MAPK 24 361 - -
Seca6g03122 613 MobiDBLite consensus disorder prediction 420 439 - -
Seca6g03122 613 FunFam Mitogen-activated protein kinase 15 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03122 Seca-Chr6 97572459 97579876 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03122 1 435 MAP Kinase Gene Family AT2G42880 88.761 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Seca6g03122 Pkinase 6.1e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03122 - - gmx:100811788 1142.1