Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03121 ATGGACAAACATTCTAAGGACTCTTTGCCAGCTCATGGTGTTGCAGGCCCAACTGAGATTCCGCCCCTTAATATTCCAAAAAGAGTGGGAAGCAGTGCATGGGGAATACCGCGGGCTGCTGATGTATTGCACGGTTCAAGTGATGTTAGCTTGTTTTCTAGTTCACTGCCTGTTCTTCCTCATGAAAAGTGTCGATATGCAGTAAATTTGACTGATTCTGAACAATATGGTCAACCGGTTGATGATAACTTGCTATCATTAGATAAAGTTCACGGAGAGGATGAGGGACATGATCCTTTTGATGATTTTGAAACCAATGCAATTGGAAACATGCTTCCTGATGATGAAGAGGAGCTTTTAGCTGGGATAATGGATGATTTTGACCTAAGTAGGCTGCCCAGCCAAATTGAGGATTTGGATGAAAATGATCTGTTTGTCAATGGAGGGGGATTTGAAATGGATTTTGAACCCCAAGAGAGCCTTAGCATTGGTATGTCAAAGATGAGCATATCAGATGGAGTTGCTTCCAATGGCATTGGACATTATGCAATCCCGAATGGTGTGGGAACAGTGGCTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTTCGAAATATCAACAGCAATGTTGAGGACTCTGAATTACGAGCACTATTTGAGCAATATGGGGATATCAGAACTTTGTACACAGCATGCAAGCATAGGGGCTTTGTGATGATATCTTACTATGACATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAACCCTTGAGACGAAGAAAACTTGATATTCATTTTTCAATTCCTAAGGATAACCCGTCGGAAAAAGATATAAACCAAGGAACACTTGTAGTGTTCAATTTAGATCCCTCAGTATCAAATGATGATCTTCGTCAAATATTTGGGGCTTATGGTGAGGTCAAGGAGATCAGAGAAACACCTCATAAGAGACACCACAAATTTATTGAATTTTATGATGTTAGAGCAGCAGATGCAGCCCTTAAAGCATTAAATCGAAGTGATATTGCTGGGAAACGCATAAAACTTGAACCTAGCCGCCCTGGTGGGGCACGTAGAAACTTGATGCAACAATTGAGTCAAGAATTGGAACAAGATGAAGCTCGAACTTTTAGGCATCAAGTAGGTTCACCTTTGGCCAATTCTCCTCCAGGTAACTGGGCACAATTTGGTAGTCCAATTGAACACAGTCCATTAGGTTCTTTTAGCAAGTCCCCTGGTTTGGGTCATGCCAGCCCTATTAATACCAACCATTTGTCTGGATTGGCTGCAATTCTTTCTCCACATGCATCAACCTCTACCAAGATTGCACCAATTGGCAAGGACCCTGGAAGGGTTTCAAATCAGATGTTTGCCAACTCTGGATCAACACAAGGAGCAGCTTTTCAGCATTCTATGTCCTTTCCTGAACAAAAAGTAAATGCAAGTCCTAGGCCTATATCTACTTTTGGTGAATCAACTTCAAGTTCATCAAGTATTGGAACACTTTCTGGTCCTCAATTTCTTTGGGGAAGCCCAACTCCTTACTCAGAGCATTCAAACACATCTGCCTGGTCTTCATCTTCTGTGGGACATCCATTTACATCTAGTAGCCAAAGGCAGGGTTTCCCATATACTAGTCATCGCAGTCCTTTTCTTGGATCCCAACAACATCATCATCATGTTGGATCTGCTCCATCTGGCCTTCCTATTGATAGGCATTTTAGCTACTTCCCAGAGTCACCTGATGCTTCTCTCATGAGCCCAGTTGCATTTGGGAATTTAAATCACAATGATGGAAATTTTATGGTGAACATGGCTGCTCGTGCATCTGTAGGAGTTGGTGTTGGCCTTTCAGGAACTACCACTGAAATTAGTTCACCTAATTTCCGAATGATGTCACTGCCTAGGCATGGTTCATTGTTCCTTGGGAATGGTTCGTATTCTGGACTAGGAGCAACTAACATTGAGGCATTAGCTGAACGTGGACGAAGTAAGCGACCTGACAATAATGGGAACCAAATTGATAGTAAGAAGCTGTACCAGCTTGATCTAGACAAAATCATCAGCGGTGAAGATACAAGGACTACTTTAATGATTAAAAACATTCCTAACAAGTACACTTCAAAGATGCTGCTTGCTGCAATTGATGAAAATCACCGGGGGACTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAATAAGTGTAATGTGGGTTATGCTTTCATCAATATGGTGTCTCCTTCACACATCATACCCTTCTATAAGGCATTTAACGGGAAGAAATGGGAGAAGTTTAATAGCGAAAAAGTTGCTTCACTAGCATATGCGCGGATACAAGGAAAGGCTGCACTTGTGATGCATTTTCAGAATTCAAGCTTAATGAACGAGGACAAGCGGTGCCGGCCTATTCTCTTTCATTCAGAGGGCCAAGATACTGGTGAACAGGAACATTTTCTATCCAGCAACTTGAATATATGCATTCGGCAACCAGATGGGTCTTACTCAAGTGATTTGTTGGAGAGCCCAAAGGGCAATTTGGATGAGAGGCTAGAGAAAGATTAA 2586 0.4215 MDKHSKDSLPAHGVAGPTEIPPLNIPKRVGSSAWGIPRAADVLHGSSDVSLFSSSLPVLPHEKCRYAVNLTDSEQYGQPVDDNLLSLDKVHGEDEGHDPFDDFETNAIGNMLPDDEEELLAGIMDDFDLSRLPSQIEDLDENDLFVNGGGFEMDFEPQESLSIGMSKMSISDGVASNGIGHYAIPNGVGTVAGEHPYGEHPSRTLFVRNINSNVEDSELRALFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAADAALKALNRSDIAGKRIKLEPSRPGGARRNLMQQLSQELEQDEARTFRHQVGSPLANSPPGNWAQFGSPIEHSPLGSFSKSPGLGHASPINTNHLSGLAAILSPHASTSTKIAPIGKDPGRVSNQMFANSGSTQGAAFQHSMSFPEQKVNASPRPISTFGESTSSSSSIGTLSGPQFLWGSPTPYSEHSNTSAWSSSSVGHPFTSSSQRQGFPYTSHRSPFLGSQQHHHHVGSAPSGLPIDRHFSYFPESPDASLMSPVAFGNLNHNDGNFMVNMAARASVGVGVGLSGTTTEISSPNFRMMSLPRHGSLFLGNGSYSGLGATNIEALAERGRSKRPDNNGNQIDSKKLYQLDLDKIISGEDTRTTLMIKNIPNKYTSKMLLAAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGKKWEKFNSEKVASLAYARIQGKAALVMHFQNSSLMNEDKRCRPILFHSEGQDTGEQEHFLSSNLNICIRQPDGSYSSDLLESPKGNLDERLEKD. 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03121 861 CDD RRM1_MEI2_like 202 278 IPR034453 -
Seca6g03121 861 SUPERFAMILY RNA-binding domain, RBD 703 788 IPR035979 GO:0003676
Seca6g03121 861 FunFam MEI2-like protein 5 isoform 2 192 286 - -
Seca6g03121 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 361 IPR000504 GO:0003723
Seca6g03121 861 SMART rrm1_1 204 272 IPR000504 GO:0003723
Seca6g03121 861 SMART rrm1_1 289 357 IPR000504 GO:0003723
Seca6g03121 861 SMART rrm1_1 703 779 IPR000504 GO:0003723
Seca6g03121 861 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 276 IPR000504 GO:0003723
Seca6g03121 861 MobiDBLite consensus disorder prediction 526 559 - -
Seca6g03121 861 PANTHER RNA RECOGNITION MOTIF-CONTAINING 49 832 - -
Seca6g03121 861 Pfam RNA recognition motif 2 701 797 IPR007201 -
Seca6g03121 861 MobiDBLite consensus disorder prediction 1 24 - -
Seca6g03121 861 SUPERFAMILY RNA-binding domain, RBD 200 363 IPR035979 GO:0003676
Seca6g03121 861 FunFam Protein MEI2-like 1 287 382 - -
Seca6g03121 861 MobiDBLite consensus disorder prediction 526 572 - -
Seca6g03121 861 CDD RRM3_MEI2_like 704 789 IPR034454 -
Seca6g03121 861 CDD RRM2_MEI2_like 287 357 - -
Seca6g03121 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 290 355 IPR000504 GO:0003723
Seca6g03121 861 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 205 269 IPR000504 GO:0003723
Seca6g03121 861 Gene3D - 287 385 IPR012677 -
Seca6g03121 861 Gene3D - 192 286 IPR012677 -
Seca6g03121 861 MobiDBLite consensus disorder prediction 482 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03121 Seca-Chr6 97525115 97535047 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03121 198 374 Eukaryotic Initiation Factors Gene Family AT3G16380 25.253 1.39e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03121 - - gmx:100812324 1535.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03121 6 97525115 97535047 Seca6g03121 6 97525115 97535047 ECH