Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03112 ATGACATGCAACAATTATTTTTCTCAGGTCAGTCAGCAACGCACCTTCATACAGATGAGGACTGTTCTCAAGGTTGTGGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCATTGAAAGGGAAGAAAGGGGCAAGATTAGGTGATACAATAATAGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTGCGCGCAGCAATGCAAAAGGGAAGATGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTGTTTGGGCCAGTGCCTCATGAGCTGAGGCAAAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 408 0.4534 MTCNNYFSQVSQQRTFIQMRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03112 135 ProSitePatterns Ribosomal protein L14 signature. 73 99 IPR019972 -
Seca6g03112 135 Pfam Ribosomal protein L14p/L23e 17 134 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca6g03112 135 NCBIfam 50S ribosomal protein L14 17 134 IPR005745 GO:0003735|GO:0006412|GO:0015934
Seca6g03112 135 Hamap 50S ribosomal protein L14 [rplN]. 16 135 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca6g03112 135 FunFam 50S ribosomal protein HLP, mitochondrial-like 16 135 - -
Seca6g03112 135 SMART Ribosomal_L14_2 16 135 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca6g03112 135 Gene3D Ribosomal protein L14 16 135 IPR036853 GO:0003735|GO:0005840|GO:0006412
Seca6g03112 135 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 17 134 IPR000218 GO:0003735|GO:0005840|GO:0006412
Seca6g03112 135 SUPERFAMILY Ribosomal protein L14 17 134 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03112 Seca-Chr6 97337439 97338081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03112 27 118 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 3.46e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03112 K02874 - gmx:100818301 238.81