Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03096 ATGGTAACAATTACAACCTCTTACACTATCATTCCAAATGAATCGACTCCACAAGGTCGTTTATGGTTGTCCGATATAGACCAAGTCATTCGTATGCGCCACACACTCACCATTTACATTTACAAAGTAAAACACAACCCCGATTTCATAGAGAGGTTGAGGAACTCCCTTAGCATGATTCTAGTGCACTATTATCCCATAGCTGGTCGAGTGTGTTGGGCAGAAGGTGGTCGAATAGAATTTGATTGTAATGCAAAGGGAGCAATATTGCTTGAAGCTGAAACCACAAAAACATTGACTGATCATGAAGACTTTTCTCCCTCTGAGTCCACCAAAGAGCTTGTTCCAACAATCGATTACAATCAACCTATGGAGGAGCTTCCTTTATTAGCAGTGCAACTCACAAGATTCCATGGCAATGAAGGCCTTGCAATTGGAGTTGCTTACTTTCACCCTTTGTCTGATGGGCTCGGAGCCATTCAATTCATCAACTCATGGGCAAAGATAGCTCGAGGAGACACATTAGAGCCCCATGAAATGCCCTTTCTTGATCGAACAATACTCAAATTTTCACCCCCTTCTGAGTTAAAGCCTCTGCCACTCATTCTAGGAAGATCTGATGCCACTGTTGAAAGGAATAAGAAGATAACTGCTGCATCTTTAAGACTCACAGCAGAGCAAGTGGAAAAGCTCAAGAAGAAGGCCAATGAACAAGCCCCAAAACAAGGGTCTAGACCTTATAGTAAATATGAAGTAATTGGAGCACATATATGGAGATGTGCATCTAAGGCTCGTGAGCTTGATGAAAATCAACCAAGTGTTGTTCGGTTCCATGTTGATATTCGCAATAGAATGGTTCCACCTCTCCCTCAAAATTATTTTGGGAATGCCTTGGCACAAACATGGGCAAGAGGTTATGTTGGAGATATCACATTAAAACCATTGAATTATGTTGCACAAAAGATAAGGGAAGCAACAAAACAAGTAAGTGATGAGTATATAAGGTCGCAACTTGATGTTATTAGAGGACAAGAGCATTTGGATGATGCAAGGGCTTTATGCATAGAAGGTAAGAATGCCTCATTTTGTGGGAATCCTAATTTTCATCTTACAAGCTGGATGAGCATGCCGGTGTATGAAGCAGATTTTGGGTGGGGAAAGCCTGTGTACTTTGGCCTAGCATATGTTGCCGCACACGATAGGGCCTTAATTCTTCTTAGCCCAGAAGGGGATGGCTCTGTTATTGTGTGTTTGCACTTCCAGGTAGCACATATTCAACTTTTCAAGACATTATTCTATGATATATGA 1308 0.4151 MVTITTSYTIIPNESTPQGRLWLSDIDQVIRMRHTLTIYIYKVKHNPDFIERLRNSLSMILVHYYPIAGRVCWAEGGRIEFDCNAKGAILLEAETTKTLTDHEDFSPSESTKELVPTIDYNQPMEELPLLAVQLTRFHGNEGLAIGVAYFHPLSDGLGAIQFINSWAKIARGDTLEPHEMPFLDRTILKFSPPSELKPLPLILGRSDATVERNKKITAASLRLTAEQVEKLKKKANEQAPKQGSRPYSKYEVIGAHIWRCASKARELDENQPSVVRFHVDIRNRMVPPLPQNYFGNALAQTWARGYVGDITLKPLNYVAQKIREATKQVSDEYIRSQLDVIRGQEHLDDARALCIEGKNASFCGNPNFHLTSWMSMPVYEADFGWGKPVYFGLAYVAAHDRALILLSPEGDGSVIVCLHFQVAHIQLFKTLFYDI. 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03096 435 Pfam Transferase family 1 433 - -
Seca6g03096 435 Gene3D - 205 435 IPR023213 -
Seca6g03096 435 Gene3D - 1 198 IPR023213 -
Seca6g03096 435 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 10 432 - -
Seca6g03096 435 Coils Coil 218 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03096 Seca-Chr6 97089836 97091165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03096 2 435 Monolignol Biosynthesis Gene Families AT5G48930 33.183 4.25e-87 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03096 K13065 - gmx:100778626 595.119