Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03083 ATGGCAGATATTGTTATCTCCATTGTGGCTAAACTCACTGAATTTTTGGTGGAACGAGCAATGCGCAGGGCACAGCACTTTCTTTGTGTTGGTAAAGTAATCAAAGATCTTGAGAATGAAAAGAAGGAGCTCACATCTGAAAGAGATAGCTTGCTTGGTCGAGTTGAACAAGCCAAGGAAAGAACTGAAGTAATTGAGGAACCTGTAGAAAAGTGGCTTTATGATGTGAATACTTTACTGGAAGAGGTGGCAGATCTGGAGCAAAGGAATAGAACAAACACCAGTTGCTTTCAAGGAAAACATCGTTTATGCAAGCAAATGCTAAAGAAAATTGAGGCAATGAGGAATTTCAAAGGCAAAAGCAATGTTCAGCCATTTTGCCGTCGTGCTTCACTTCCAGGTATTCAGTATCAGTCATCCAAAAAATTTATTTATTTTGAATCAGCAAAATTGGCTTACAATCAACTTTTGGAGGCACTCCAAGAGGATGACATCTTCATGATAGGTGTGTATGGAATGGGTGGATGTGGGAAAACAACTCTTGTAATAGAAATTGGTAAAAAGCTTGAGGAGTTGAATTTGTTTGATAAGGTCATTTTAATTACAGTGTCTCAAACTCCAAACATTATAGACATTCAAAGCAAAATGGCAGATATGTTGAACCTGAAACTGGAGGAAGTATCTGAAGAGGGAAGAGCACAACGTTTATGGTTGAGTTTGAAAGAAAGGAAGCGAATTCTTATCATCATAGATGATTTATGGAGACAGTTTAATTTGGAGGATGTAGGCATTCGCTTAGATAATGATTACAATGGCAAGGTCCTTATAACGACTCGTGATCAACATGTGTGTGATTCAATGGACTGTCAAAAGAAGATTCATTTGGAGCTTTTATCTAGAGATGAATCTTGGACTCTGTTCCAAAAGCATGCAAACATTGATGATGGTTTCTCCAAGTCATTGGATGATGTGCCATTGAAAATTTGCTATGAATGTCGAGGACTGCCTATTGCAATTGTAGCTGTGGGATCATCCTTAAAAGGAAAATCTATTGCTAATTGGAATGTGGCATTGAACAGCTTGAGGCTTGCTGAGGCTATTGATGATCATGTGGAAGAAGGAGTGAAAGCTGCTTTGAGTTGTCTTAAATTAAGCTATGATTATTTACAAAACAAAGAGGCACAGTTGCTCTTCTTAATGTGTGCTATGTTTCCAGAAGACTATAGCATCTCAACAGAAGATTTGATCCGATATGCAGTTGGAGTGGGCCAAGGAGGAACATTTTCATTGGACTCAGCAAGGGACATGATTGAAGCAAATTTAAGCAAACTTTTAGGATCTTCATTGTTGATGCATGCTGAGGAAGGTAAAGACTATGTGAGAATGCATGACGTGGTTCGTGATGCAGCCTTATGGATATCAAAGAGATCAGAGAATCGCCAAATTTTGGTGAATCTTGACAAACCACTTAGCACCTTGGCAGAGGATGATAGTGTTAGAGGTTGTTTTGCAGTGTCCTCATGGTATAAGGAAAACCAAGTATTTCATCAGTTGCATGCTCCCCACCTTGAAATTCTATTGCTACATACTGATGTTAAGGTTTCCTTGAATTTATCACATGCAACATTTGAAGGAATAGAAGGGCTCAAGGTATTTTCTCTAATCAATTCATTCCTTCATAAACAATCACTTTTGTTACCTCAATCAACCCAGTTGTTGGCAAATCTTCGAACTCTGCGCTTGAACCGATGGCAGTTGGGTGACATTTCTTTCATAACAAGTTTAGCAAGACTTGAGGTTCTTGACTTGCGAGATTCTAGCTTCAATGAACTTCCTAGAGAAATAGAAAAGCTCAAAAGATTGAAGCTACTAGATTTGTCGCGTTGTGATATTCTTCAAGAAAATTATAATGAAGCAATAGGGAAATGTTCACAGCTTGAAGAATTATATATTTCAGGATGGCATCTAGCAAAATACATTTCTCAAAGTATTGTGGATATTAGTAGTCTCCCAAACCTGCAAAGGTTTGTAATATATGCTGGTCAGATCAATGCACCATATTATGTGAAAAGACTTCTAGAAGGTGTGGATTTCAATATCTCCAGCTTGAGAGCATGTAATAAGAATATCCTCCAAATAGCTGAGATTGTTCGTTTCGAAAGCCTTTATGGAGGATGTAAAAACATCATCCCAGACATGGTTGGAGTTGTGGGAGGTATGAATGGTTTAACTAATCTCATTCTTCATGATTGCCAAGAGATACAGAGCATCTTCAATACAACCTTTGATTCTGATCATGTTGTCTCAATTAAGGTTGATACTACAATTCCCAGGTTAGTCAAGTTAGAGTTGTTGCATTTGAATAACTTGAAAGAATTGTGTCAAGGTCCACCTCAGCAAGTGCTACCATTCTTTGAGAAATTAGAAACACTATGTATAAGGTATTGCCCGAAGTTGCACAACATATTTCCACAGGAATGTAGCTTAGGAAATCTTAATACCCTCATAATAGAAAATCATGATTGGGATGACAATTGCACGTCAGGTGAAGTACTATTCTCAACGTGTGTTGCTCAAAGTCTACAACAGCTAAAAAAGCTAGTTATAATATGTTGCAAGGAATTGAAGCATATAATTGAAAGTGGAGGCGAGCATTTTGTGATGCCCAATTTGAAGACACTTCACATTTCTAAATGTAGGAAGTTAGAGTCGATATTCCCAATATGTTGTTTTGAAGGACTACCACGACTAGAAAACTTAACAATAGAAGAGGCTCCTAAGCTGAAATATGTATTTGGTGAATGTGATCACCAAGATCATTCATCTCACCAAAACCAAATCATGCCTCCACATTTGAAAAATATCGAACTCCATCGTCTTGATAATCTAGTTGGGATATGTCCCAAAAATATCATGTAA 2919 0.3768 MADIVISIVAKLTEFLVERAMRRAQHFLCVGKVIKDLENEKKELTSERDSLLGRVEQAKERTEVIEEPVEKWLYDVNTLLEEVADLEQRNRTNTSCFQGKHRLCKQMLKKIEAMRNFKGKSNVQPFCRRASLPGIQYQSSKKFIYFESAKLAYNQLLEALQEDDIFMIGVYGMGGCGKTTLVIEIGKKLEELNLFDKVILITVSQTPNIIDIQSKMADMLNLKLEEVSEEGRAQRLWLSLKERKRILIIIDDLWRQFNLEDVGIRLDNDYNGKVLITTRDQHVCDSMDCQKKIHLELLSRDESWTLFQKHANIDDGFSKSLDDVPLKICYECRGLPIAIVAVGSSLKGKSIANWNVALNSLRLAEAIDDHVEEGVKAALSCLKLSYDYLQNKEAQLLFLMCAMFPEDYSISTEDLIRYAVGVGQGGTFSLDSARDMIEANLSKLLGSSLLMHAEEGKDYVRMHDVVRDAALWISKRSENRQILVNLDKPLSTLAEDDSVRGCFAVSSWYKENQVFHQLHAPHLEILLLHTDVKVSLNLSHATFEGIEGLKVFSLINSFLHKQSLLLPQSTQLLANLRTLRLNRWQLGDISFITSLARLEVLDLRDSSFNELPREIEKLKRLKLLDLSRCDILQENYNEAIGKCSQLEELYISGWHLAKYISQSIVDISSLPNLQRFVIYAGQINAPYYVKRLLEGVDFNISSLRACNKNILQIAEIVRFESLYGGCKNIIPDMVGVVGGMNGLTNLILHDCQEIQSIFNTTFDSDHVVSIKVDTTIPRLVKLELLHLNNLKELCQGPPQQVLPFFEKLETLCIRYCPKLHNIFPQECSLGNLNTLIIENHDWDDNCTSGEVLFSTCVAQSLQQLKKLVIICCKELKHIIESGGEHFVMPNLKTLHISKCRKLESIFPICCFEGLPRLENLTIEEAPKLKYVFGECDHQDHSSHQNQIMPPHLKNIELHRLDNLVGICPKNIM. 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03083 972 Coils Coil 69 89 - -
Seca6g03083 972 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 29 932 - -
Seca6g03083 972 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 401 IPR027417 -
Seca6g03083 972 Gene3D - 130 294 IPR027417 -
Seca6g03083 972 PRINTS Disease resistance protein signature 167 182 - -
Seca6g03083 972 PRINTS Disease resistance protein signature 332 346 - -
Seca6g03083 972 PRINTS Disease resistance protein signature 616 632 - -
Seca6g03083 972 PRINTS Disease resistance protein signature 240 254 - -
Seca6g03083 972 Coils Coil 629 649 - -
Seca6g03083 972 SUPERFAMILY L domain-like 461 938 - -
Seca6g03083 972 Coils Coil 34 61 - -
Seca6g03083 972 Gene3D - 385 471 IPR036388 -
Seca6g03083 972 Gene3D Ribonuclease Inhibitor 512 964 IPR032675 -
Seca6g03083 972 Pfam NB-ARC domain 154 387 IPR002182 GO:0043531
Seca6g03083 972 FunFam Probable disease resistance protein At1g61300 142 292 - -
Seca6g03083 972 Gene3D - 298 384 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03083 Seca-Chr6 96915445 96918363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03083 153 592 WRKY Transcription Factor Family AT5G45050 25.486 3.29e-12 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03083 - - aprc:113855292 1085.48