Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03078 ATGAGTTGCTTTCCATGTTGTACGTCACAAGAGAGGATCAACAAGAAGTCATTGAAGAATAGCATTAAGGAATACCATGAAGCAAAAACTCTAGCCTCATTTGCCAACATCTATTTTAAAACTGAAAGTGGCAAGAGAAGGTTCATAAAAGATGAGATAGCAAAGCTTGGGAAAGGAAATATTACCTCTAAGATTTTTACTTACCGTGAGCTATGTGTTGCAACTGGGAACTTTCACCCTTCCAATATGATTGGTGAAGGAGGCTTTGGGAGGGTATACAAAGGATGCATTAAAGGCACAGATCAAGTTGTTGCTGTGAAGCAGCTAGACAGGAATGGATTTCAAGGAAACAGAGAATTTCTTGCAGAGGTTTTGATTTTGAGTCTTTTACACCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCTGAAGGTGAACAAAGGGTTTTGGTATATGAATACATGGCCAATGGTTCTTTAGAAGATCACCTACTTGACTTAAATCAAGACGAAAAGCCCTTGGACTGGCAAACTAGAATGAAAATTGCAGAAGGTGCAGCAAAAGGACTTGAATATTTACATGAAGTAGCAAACCCACCAGTGATATATCGTGACTTCAAAGCATCAAACATACTGTTAGATGAAAACTTCAATCCAAAGCTTTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGGGATAACTCACATGTATCCACCAGAGTGATGGGAACTTATGGCTACTGTGCTCCTGAGTATGCATCAACAGGGCAGTTAACTTCAAAATCAGATGTGTACAGCTTTGGAGTAGTGTTTTTGGAAATGATCACAGGAAGAAGAGTCATTGACAATTCAAGGCCATCAGAACAACAAAATTTAGTCATTTGGGCACAACCGCTTCTGAGAGACAGAAGGAAATTTACAATAATGGCAGATCCATTGCTAGAAGATAAATACCCCATAAAGGGTCTATACCAAACTTTAGCAGTAGCAGCAATGTGTCTCCAAGAAGAAGCTGATACCCGGCCTTTGATCAGTGATGTCGTTACAGCTCTTGACTTTTTGGCAAGGAGGAAAGTAGAGGTGGATGAAATGCAACATTCAAAAGAGATTTCTCCTTCTTCTTCTCAGGATGGACATGACAGTGGAGACAATGAATCTAATGCAGTGAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGAAGAAGAAGATGAGGATGAGGATGGTGATGATACTGATATAAGAGGATAG 1272 0.3962 MSCFPCCTSQERINKKSLKNSIKEYHEAKTLASFANIYFKTESGKRRFIKDEIAKLGKGNITSKIFTYRELCVATGNFHPSNMIGEGGFGRVYKGCIKGTDQVVAVKQLDRNGFQGNREFLAEVLILSLLHHPNLVNLVGYCAEGEQRVLVYEYMANGSLEDHLLDLNQDEKPLDWQTRMKIAEGAAKGLEYLHEVANPPVIYRDFKASNILLDENFNPKLSDFGLAKLGPTGDNSHVSTRVMGTYGYCAPEYASTGQLTSKSDVYSFGVVFLEMITGRRVIDNSRPSEQQNLVIWAQPLLRDRRKFTIMADPLLEDKYPIKGLYQTLAVAAMCLQEEADTRPLISDVVTALDFLARRKVEVDEMQHSKEISPSSSQDGHDSGDNESNAVNDDDDDDDDDDDDDDDDEEEDEDEDGDDTDIRG. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03078 423 ProSitePatterns Protein kinases ATP-binding region signature. 84 107 IPR017441 GO:0005524
Seca6g03078 423 Pfam Protein kinase domain 79 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03078 423 Gene3D Phosphorylase Kinase; domain 1 63 154 - -
Seca6g03078 423 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g03078 423 MobiDBLite consensus disorder prediction 369 384 - -
Seca6g03078 423 MobiDBLite consensus disorder prediction 363 423 - -
Seca6g03078 423 CDD STKc_IRAK 84 353 - -
Seca6g03078 423 MobiDBLite consensus disorder prediction 388 423 - -
Seca6g03078 423 SUPERFAMILY ARM repeat 386 419 IPR016024 -
Seca6g03078 423 Gene3D Transferase(Phosphotransferase) domain 1 155 378 - -
Seca6g03078 423 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Seca6g03078 423 PANTHER OS07G0668900 PROTEIN 3 364 - -
Seca6g03078 423 SUPERFAMILY Protein kinase-like (PK-like) 64 371 IPR011009 -
Seca6g03078 423 FunFam Serine/threonine-protein kinase PBS1 155 370 - -
Seca6g03078 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03078 Seca-Chr6 96881245 96883698 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03078 1 356 Glycoside Hydrolase AT3G07070 61.560 1.18e-156 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca6g03078 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03078 - - gmx:100790474 669.463