Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03051 ATGCACCGAGAACTAATGAGGCTACCGGATTCTCATCAAATTGACACATCCAAACATTATGCTGCCCAAGATAATGATGATTTCATACAATCAGAATCAGATAGACAGATGCTTCTTATAAAGAAGCAGGATGAGGAGTTGGATGAGCTTAGTTTAAGTGTGCAAAGAATTGGAGGTGTTGGACTTACAATACATGAAGAACTCGTTGCACAGGAAAAGATTATAGATGAGCTGGGTAACGAGATGGACAGTACATCAAACCGTCTAGATTTTGTCCAAAAAAAAGTGGGAATGGTTATGAAGAAGGCTAGTGCGAAGGGCCAGATCATGATGATATTGGGTTTGTTGGCCCTGTTCATTTTCCTCTTTATCTTGGTCTTCCTCACCTAG 390 0.4051 MHRELMRLPDSHQIDTSKHYAAQDNDDFIQSESDRQMLLIKKQDEELDELSLSVQRIGGVGLTIHEELVAQEKIIDELGNEMDSTSNRLDFVQKKVGMVMKKASAKGQIMMILGLLALFIFLFILVFLT. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03051 129 Coils Coil 75 95 - -
Seca6g03051 129 Gene3D - 44 108 - -
Seca6g03051 129 ProSitePatterns Syntaxin / epimorphin family signature. 43 82 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca6g03051 129 Pfam SNARE domain 74 125 IPR000727 -
Seca6g03051 129 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 37 99 IPR000727 -
Seca6g03051 129 FunFam syntaxin-61 isoform X1 40 101 - -
Seca6g03051 129 PANTHER GOLGI SNARE BET1-RELATED 16 126 - -
Seca6g03051 129 CDD SNARE_Qc 40 96 - -
Seca6g03051 129 SUPERFAMILY SNARE fusion complex 35 99 - -
Seca6g03051 129 SMART tSNARE_6 32 99 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03051 Seca-Chr6 96571308 96574688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03051 1 129 SNARE and Associated Proteins AT1G28490 74.419 4.43e-65 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03051 K08500 - gmx:100793612 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g03051 6 96571308 96574688 Seca6g03051 6 96571308 96574688 PCT