Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03049 ATGTTTTCCTCCTCCCTCACAAATGGGGTTTCCTCAAAACCTCACCTTTCCCATCACCCCCTTCCCTTCCCTCACCAACTTCACCACCAAACCCCTTTCCCTCACCCTCCATCGAGGAAATTCCACTCACCAATCCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCGAAACGGTGAAGAACACTCAGAAGATCACCGAAGCAATGAAGCTGGTGGCCGCCGCCAGAGTCCGGCGAGCCCAAGAAGCCGTCATCAATGGAAGACCCTTCTCTGAGACCCTCGCTGAAGTGTTGCACGACATCAACGAACGCCTCCGAAACGACGACGTCGAGGTTCCTCTTACCAGCATCAGGCCAGTGAAGAAGGTTGCCCTTGTTGTCATCACAGGGGATCGTGGCCTCTGTGGCGGTTTCAACAATGCTGTGGTGAAAAAAGCCGAGACCAGAATTAATGAGTTGAAGAAACTCGGTTTGGGTTGCGTTGTGATCAGTGTTGGCAAAAAGGGTAACTCTTTTTTCACTCGCAGGCCTTTTGTTGAGGTTGATAGGTTTATTGAAGGTGGTGGTTTTCCCACTACAAAGGAAGCTCAAGCTATTGCTGATGATGTTTTTTCACTTTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTGTATACTAGGTTTGTGTCCTTGGTTAAGTTTGATCCGGTGATTCAAACTTTGTTGCCTTTGTCAAAGAAAGGAGAGGTTTTTGATGTGAATGGGAATTGTGTAGATGCCATGGAGGATGAGTATTTTAGGTTGACTTCTAAGGATGGGAAGTTGGCTGTGGAGAGGGATGTTATGAGGAGGAAGAAGAAGAAGAGAGATGATGGGTGTGTTCCCCTTATGCAATTTGAGCAAGATCCTGTTCAGATTCTTGATGCAATGATGCCTCTTTATTTAAACAGTCAGATTTTGAGGGGCTTGCAAGAATCACTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGGCTAATGCCACTGATAATGCAACTGAATTGAAGAAGAATCTTTCAATGGCCTACAATAGGGAACGGCAGGCAAAAATCACAGGGGAGATATTGGAGATTGTGGCAGGTGCTGAGGCACTAACACAAATTGATTGA 1131 0.4713 MFSSSLTNGVSSKPHLSHHPLPFPHQLHHQTPFPHPPSRKFHSPIRCGIRELRQRIETVKNTQKITEAMKLVAAARVRRAQEAVINGRPFSETLAEVLHDINERLRNDDVEVPLTSIRPVKKVALVVITGDRGLCGGFNNAVVKKAETRINELKKLGLGCVVISVGKKGNSFFTRRPFVEVDRFIEGGGFPTTKEAQAIADDVFSLFVSEEVDKVELVYTRFVSLVKFDPVIQTLLPLSKKGEVFDVNGNCVDAMEDEYFRLTSKDGKLAVERDVMRRKKKKRDDGCVPLMQFEQDPVQILDAMMPLYLNSQILRGLQESLASELAARMGAMANATDNATELKKNLSMAYNRERQAKITGEILEIVAGAEALTQID. 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03049 376 Hamap ATP synthase gamma chain [atpG]. 46 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 FunFam ATP synthase gamma chain, chloroplastic 265 372 - -
Seca6g03049 376 CDD F1-ATPase_gamma 49 369 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 Coils Coil 49 69 - -
Seca6g03049 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 273 372 - -
Seca6g03049 376 Gene3D ATP synthase, gamma subunit, helix hairpin domain 47 115 - -
Seca6g03049 376 FunFam ATP synthase gamma chain, chloroplastic 47 114 - -
Seca6g03049 376 NCBIfam ATP synthase F1 subunit gamma 49 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 PRINTS ATP synthase gamma subunit signature 350 371 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 PRINTS ATP synthase gamma subunit signature 213 230 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 PRINTS ATP synthase gamma subunit signature 319 338 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 PRINTS ATP synthase gamma subunit signature 120 139 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 Coils Coil 332 352 - -
Seca6g03049 376 PANTHER ATP SYNTHASE GAMMA CHAIN 21 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 Pfam ATP synthase 49 372 IPR000131 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 ProSitePatterns ATP synthase gamma subunit signature. 358 371 IPR023632 -
Seca6g03049 376 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 48 372 IPR035968 GO:0015986|GO:0045261|GO:0046933
Seca6g03049 376 Gene3D - 116 240 - -
Seca6g03049 376 FunFam ATP synthase gamma chain, chloroplastic 116 239 - -
Seca6g03049 376 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03049 Seca-Chr6 96561757 96562887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03049 24 372 Primary Pumps ATPases AT1G15700 72.286 1.24e-180 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03049 K02115 - qsu:112000322 495.352