LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g03049	ATGTTTTCCTCCTCCCTCACAAATGGGGTTTCCTCAAAACCTCACCTTTCCCATCACCCCCTTCCCTTCCCTCACCAACTTCACCACCAAACCCCTTTCCCTCACCCTCCATCGAGGAAATTCCACTCACCAATCCGCTGCGGCATCCGCGAGCTCCGCCAACGAATCGAAACGGTGAAGAACACTCAGAAGATCACCGAAGCAATGAAGCTGGTGGCCGCCGCCAGAGTCCGGCGAGCCCAAGAAGCCGTCATCAATGGAAGACCCTTCTCTGAGACCCTCGCTGAAGTGTTGCACGACATCAACGAACGCCTCCGAAACGACGACGTCGAGGTTCCTCTTACCAGCATCAGGCCAGTGAAGAAGGTTGCCCTTGTTGTCATCACAGGGGATCGTGGCCTCTGTGGCGGTTTCAACAATGCTGTGGTGAAAAAAGCCGAGACCAGAATTAATGAGTTGAAGAAACTCGGTTTGGGTTGCGTTGTGATCAGTGTTGGCAAAAAGGGTAACTCTTTTTTCACTCGCAGGCCTTTTGTTGAGGTTGATAGGTTTATTGAAGGTGGTGGTTTTCCCACTACAAAGGAAGCTCAAGCTATTGCTGATGATGTTTTTTCACTTTTTGTTAGTGAGGAAGTTGATAAGGTTGAGCTTGTGTATACTAGGTTTGTGTCCTTGGTTAAGTTTGATCCGGTGATTCAAACTTTGTTGCCTTTGTCAAAGAAAGGAGAGGTTTTTGATGTGAATGGGAATTGTGTAGATGCCATGGAGGATGAGTATTTTAGGTTGACTTCTAAGGATGGGAAGTTGGCTGTGGAGAGGGATGTTATGAGGAGGAAGAAGAAGAAGAGAGATGATGGGTGTGTTCCCCTTATGCAATTTGAGCAAGATCCTGTTCAGATTCTTGATGCAATGATGCCTCTTTATTTAAACAGTCAGATTTTGAGGGGCTTGCAAGAATCACTGGCTAGTGAGCTTGCTGCTAGAATGGGTGCCATGGCTAATGCCACTGATAATGCAACTGAATTGAAGAAGAATCTTTCAATGGCCTACAATAGGGAACGGCAGGCAAAAATCACAGGGGAGATATTGGAGATTGTGGCAGGTGCTGAGGCACTAACACAAATTGATTGA	1131	0.4713	MFSSSLTNGVSSKPHLSHHPLPFPHQLHHQTPFPHPPSRKFHSPIRCGIRELRQRIETVKNTQKITEAMKLVAAARVRRAQEAVINGRPFSETLAEVLHDINERLRNDDVEVPLTSIRPVKKVALVVITGDRGLCGGFNNAVVKKAETRINELKKLGLGCVVISVGKKGNSFFTRRPFVEVDRFIEGGGFPTTKEAQAIADDVFSLFVSEEVDKVELVYTRFVSLVKFDPVIQTLLPLSKKGEVFDVNGNCVDAMEDEYFRLTSKDGKLAVERDVMRRKKKKRDDGCVPLMQFEQDPVQILDAMMPLYLNSQILRGLQESLASELAARMGAMANATDNATELKKNLSMAYNRERQAKITGEILEIVAGAEALTQID.	377

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g03049	376	Hamap	ATP synthase gamma chain [atpG].	46	372	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca6g03049	376	FunFam	ATP synthase gamma chain, chloroplastic	265	372	-	-
	Seca6g03049	376	CDD	F1-ATPase_gamma	49	369	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca6g03049	376	Coils	Coil	49	69	-	-
	Seca6g03049	376	Gene3D	ATP synthase, gamma subunit, helix hairpin domain	273	372	-	-
	Seca6g03049	376	Gene3D	ATP synthase, gamma subunit, helix hairpin domain	47	115	-	-
	Seca6g03049	376	FunFam	ATP synthase gamma chain, chloroplastic	47	114	-	-
	Seca6g03049	376	NCBIfam	ATP synthase F1 subunit gamma	49	372	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca6g03049	376	PRINTS	ATP synthase gamma subunit signature	350	371	IPR000131	GO:0015986\|GO:0045261\|GO:0046933
	Seca6g03049	376	PRINTS	ATP synthase gamma subunit signature	213	230	IPR000131	GO:0015986\|GO:0045261\|GO:0046933

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g03049	Seca-Chr6	96561757	96562887	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g03049	24	372	Primary Pumps ATPases	AT1G15700	72.286	1.24e-180	504

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g03049	K02115		-	qsu:112000322	495.352

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