Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03047 ATGACAACCGTTAACGATGCAGCAAATGATCAAAACGGGTTAATTGGAATGGTAGGTGGCAATGGTGGTGGTGGTGGTGAGGGGGAAGAGGTTCCCCTGAAGAAGGGTCCATGGACAACCGCAGAGGATGCTATTCTGATAGATTATGTGACAAAACATGGTGAAGGGAACTGGAACGCGGTGCAGAGGAACACAGGGTTGGCTCGTTGTGGTAAGAGTTGTAGGCTCAGATGGGCTAATCATTTACGTCCCAATTTGAAGAAAGGTGCTTTCTCCCCTGATGAAGAAAAACTCATTGTTGAGCTTCATGCACAATTTGGCAACAAATGGGCTAGAATGGCTGCTTTGTTACCTGGGAGAACAGACAATGAAATCAAGAACTACTGGAACACAAGGATCAAGCGCCGCCAGAGACAGGGTTTACCTCTTTATTCAGATGACCCTGATCATCCCACAACACCAACCACTCCTTCCTCAAGCCTCACCCCAACAGGATCAAACCCCAACACTGGCACAAAGTTTGAATTTTTTCATCAAAACCACCACCACCAACACCACCCTCTATCTCCAACTGCACACCATCATCATTCTCCTCTCTCTTCACCACTCCAACATAGAACACCTTCTTATTCTCCTCATACTTTCTTGGACCCTGCACCTTTACCTTTGTCCTCTTCTGCACCTTCCCCTCTCTCCTTCACCTTCCAAAGACCTGCACCAATGCTATGTAGCCCACTTCGCTTCAAGCGTTACCGTGCCATTCCTAGCTATAACCTTCAGGTCCCTTCAATGACACCCTGCTCCTCTGCTCTCCCTGATCCTTCTATGACTTCCCATCTTGATGGATTCAGGTTCCCAGTTCAGCTCAACTCAAGTTATTCTCAGTTTTTTCCAACTACCCCATTGTTAGAAGGGGTTTCTTCTTCTTCCTCTTCACATTACCAAACCAGGTTGGAGCACCCTTCAAACCAATTTTCAAGACCAGCCTCAGAGCAAGATATTAATAAGCTTGATATGGAGTTCAATGATCCTGCTTTCCAAACCAGCAGTGGGTTACTAGGGGATCTTCTAATGGAAGCTCAAGCACTGGCATCCGGCCAGAATTCAAAGAAACGAAATTACTTGAGTTTAAATGAAGGAAATGATGTGTTTGATGGATGCCAAAGCCTTGAGGACTACCCACTTAGTTCTCTTTACTGGCCTTCTACTCCAGCAGCACCGAAACCAAAGGAAGAAACACCAGACCTGAGCAAATTCATGAATGAGGACTTATCAACACTGCTTACTGTAATGCCTTCTTCCAGCATGCAGGGTCAAGATTGGCAGAATAACAATGCACAAGAAGTCTCCAATGTTCAATCTTCTGGTGGTCTGATGACTGATGACAATTTTGGACTTGATATCAAGCCCATAGCTTCTTTGTTTCCTCTCACCAACACAACAAACCATAATGAAAACACAGGCTGCTACACGTGGGACAATTTACCTGGTCTCTGCTAA 1500 0.4553 MTTVNDAANDQNGLIGMVGGNGGGGGEGEEVPLKKGPWTTAEDAILIDYVTKHGEGNWNAVQRNTGLARCGKSCRLRWANHLRPNLKKGAFSPDEEKLIVELHAQFGNKWARMAALLPGRTDNEIKNYWNTRIKRRQRQGLPLYSDDPDHPTTPTTPSSSLTPTGSNPNTGTKFEFFHQNHHHQHHPLSPTAHHHHSPLSSPLQHRTPSYSPHTFLDPAPLPLSSSAPSPLSFTFQRPAPMLCSPLRFKRYRAIPSYNLQVPSMTPCSSALPDPSMTSHLDGFRFPVQLNSSYSQFFPTTPLLEGVSSSSSSHYQTRLEHPSNQFSRPASEQDINKLDMEFNDPAFQTSSGLLGDLLMEAQALASGQNSKKRNYLSLNEGNDVFDGCQSLEDYPLSSLYWPSTPAAPKPKEETPDLSKFMNEDLSTLLTVMPSSSMQGQDWQNNNAQEVSNVQSSGGLMTDDNFGLDIKPIASLFPLTNTTNHNENTGCYTWDNLPGLC. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03047 499 FunFam MYB-related transcription factor 34 87 - -
Seca6g03047 499 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Seca6g03047 499 Gene3D - 90 136 - -
Seca6g03047 499 MobiDBLite consensus disorder prediction 194 211 - -
Seca6g03047 499 Gene3D - 34 87 - -
Seca6g03047 499 SUPERFAMILY Homeodomain-like 32 129 IPR009057 -
Seca6g03047 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 82 IPR017930 -
Seca6g03047 499 MobiDBLite consensus disorder prediction 149 175 - -
Seca6g03047 499 FunFam Transcription factor GAMYB 90 136 - -
Seca6g03047 499 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Seca6g03047 499 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Seca6g03047 499 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Seca6g03047 499 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Seca6g03047 499 MobiDBLite consensus disorder prediction 136 216 - -
Seca6g03047 499 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 24 453 - -
Seca6g03047 499 SMART sant 87 135 IPR001005 -
Seca6g03047 499 SMART sant 34 84 IPR001005 -
Seca6g03047 499 CDD SANT 37 82 IPR001005 -
Seca6g03047 499 CDD SANT 90 131 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03047 Seca-Chr6 96548833 96551641 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03047 17 499 MYB Transcription Factor Family AT4G26930 36.495 1.24e-74 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca6g03047 Myb_DNA-binding 4.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03047 - - lja:Lj6g3v0869180.1 638.262