Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03031 ATGCCCTTCGTGGAGAAAGAAAAATTTCATATCTCAAGAAGGTGTAGGATACACCCTGACAATGATATATACAGAGATCAGGAACAACATAAATTTCATATAGATATAAATGAATGGCAATGTGGATACTGTAAGAAAAGTTTCTATGAAGAGAAACATCTTGATCAGCATTTCGACAACAGACACTCCAATTTACTTAATTTGAATGAAAGCCGGTGCTTAGCAGATGTATGTGGTGCACTGCACTGTGACCTTGAAATGAATTCTGGGGCAAAAAAATCAAAGTGCAATCCTGCTGCTGCTGCAAGAAATAAACATCTATGTGAGAGCTTAGCCGATAGTTGTTTTCCGGTTAACGAGGGCCCTGCAGCAAGCCGACTTCATGAATTCTTCTTGCACCAATTCTGTGATGCACACAGCTGCACTGGAAGTAGGAAACCTTTCTCCAGAGGGCGCAGGAAGAGGACAAATGTGTTCTACCTCGTTGCCTCCATTTTTCTTGTGATGCTGCTGCTACTTTACTATCTTTACATTTACTTGTATCAGAGAGGAATGAAAAGGGAAACACAAGTGCTAAAGCGTATCTCACAAACCAGCAGAAAGAAAAAGCCATCTTAG 618 0.4061 MPFVEKEKFHISRRCRIHPDNDIYRDQEQHKFHIDINEWQCGYCKKSFYEEKHLDQHFDNRHSNLLNLNESRCLADVCGALHCDLEMNSGAKKSKCNPAAAARNKHLCESLADSCFPVNEGPAASRLHEFFLHQFCDAHSCTGSRKPFSRGRRKRTNVFYLVASIFLVMLLLLYYLYIYLYQRGMKRETQVLKRISQTSRKKKPS. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03031 205 ProSitePatterns Zinc finger C2H2 type domain signature. 41 62 IPR013087 -
Seca6g03031 205 PANTHER ZINC FINGER PROTEIN-RELATED 1 204 - -
Seca6g03031 205 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 64 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03031 Seca-Chr6 96432709 96436883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03031 1 205 C2H2 Transcription Factor Family AT5G63280 60.976 2.12e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca6g03031 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03031 - - gmx:100527694 392.889