Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03013 ATGGAAGCCACCTGCAATGATGCCTCTAATGCTGCTGCAGTTGAACATTCTTCTCCAGTCATGTCGTTTAATGGGAAACGACTAATCATGGATGAGATGGATTTCTTTCCACACAATAATTCAACTCCAGTTAATGATCAAATCCACCTTCATGTAGATACTAGTTTAGATCTCCTTTCAAAGATTTGTCCTAGCAACAGATCAATTGTGGAAGATGGGGCATCAGAGGCTAGGGATGATAAGAAAGATGAGTTTGTAGCTTTGGTAGCTGAATTGCACCATATGAATGCTGAAAATCAACGTCTGAGAGAGCTGATTGATCGGGTGAACAATGACTACAATGCCCTTCACATGCAGCTTATGAAGCTGATGCAGAAACAGCATAAACATGAACAGGATGAGATTAATGAAGGAGCCACAGGGGAGAAAGATAAGAGAGATGGTATGATTCCAAGGCCATTCTTGGACATTGGTTTTGCTGAAAAGGATGAGACTTCACAGCAATATTCTTCAGAGGGAAAACTGAGAGAAAGCAAAAGCATGGTTGACTTGATGGAGTGCAAGACTGATCAAAAGATTTGCACCAGTAGAGATATTGGTCAGTTGGACCTGCCAGAGAAGCTGGATTCTGACTGCAAGGATGGTGCAAAATCCAGAAGGGACCATGAAGAGAGCCCAACTCACAAAGCATTTCCAGGGTCACTCTCTAATGAAGTCACCAGATTGAGTTCTTCTTTCAGGGATAATGTTGATCAAGCATCAGAAACCATGTCAATGATCAAGAAAGCCCGCGTATCAGTTAGAGCAAGATCAGAATCTTCCATGATTTCAGATGGATGTCAATGGCGAAAGTATGGACAGAAGATGGCCAAAGGAAATCCATGTCCTCGAGCTTATTATCGTTGTACAATGGGGACTGGTTGTCCAGTTCGGAAACAAGTACAGAGGTGTGCTGAAGATAGAAGTGTGCTGGTGACAACATATGAAGGGCAACATAACCATCCACTCCCTCCTACTGCCAAAGCAATGGCATCAACCACATCTGCAGCTGCATCAATGCTTCTTTCAGGATCAATGCCAAGTGCAGATGGCCTGATAAATCCATCCATATTAGAAAGTGCAGCACTTCCTTGCTCACAGAACATGGCAACTCTCTCTGCTTCAGCTCCATTTCCAACTATCACATTGGATCTCACTCAAAATGCTACCAATTCCTCACAGCCACAAGGGGGACCACAAGGCCAACTCAGCCTCCTTCCCCCACTTCTGGCTCAGAAGTTTATGTCAACTCCAAATATTTTTGGGCAGGGAATGGAGACAGCTTCATTTACAGACACAGTAAATGCAGCAACAGCTGCTATCACTGCAGATCCAAAATTCACAGCAGCTCTTGTGGCTGCCATAACATCTATCATTGGAAGTTCAAATCCAAATAATAATGGTACAAGTGGTGACCAGCAGTGCAATAATACATGA 1476 0.4343 MEATCNDASNAAAVEHSSPVMSFNGKRLIMDEMDFFPHNNSTPVNDQIHLHVDTSLDLLSKICPSNRSIVEDGASEARDDKKDEFVALVAELHHMNAENQRLRELIDRVNNDYNALHMQLMKLMQKQHKHEQDEINEGATGEKDKRDGMIPRPFLDIGFAEKDETSQQYSSEGKLRESKSMVDLMECKTDQKICTSRDIGQLDLPEKLDSDCKDGAKSRRDHEESPTHKAFPGSLSNEVTRLSSSFRDNVDQASETMSMIKKARVSVRARSESSMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGTGCPVRKQVQRCAEDRSVLVTTYEGQHNHPLPPTAKAMASTTSAAASMLLSGSMPSADGLINPSILESAALPCSQNMATLSASAPFPTITLDLTQNATNSSQPQGGPQGQLSLLPPLLAQKFMSTPNIFGQGMETASFTDTVNAATAAITADPKFTAALVAAITSIIGSSNPNNNGTSGDQQCNNT. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03013 491 MobiDBLite consensus disorder prediction 205 228 - -
Seca6g03013 491 Coils Coil 92 126 - -
Seca6g03013 491 MobiDBLite consensus disorder prediction 127 151 - -
Seca6g03013 491 SUPERFAMILY WRKY DNA-binding domain 269 337 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03013 491 MobiDBLite consensus disorder prediction 127 152 - -
Seca6g03013 491 ProSiteProfiles WRKY domain profile. 271 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03013 491 Gene3D WRKY domain 261 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca6g03013 491 FunFam probable WRKY transcription factor 31 261 338 - -
Seca6g03013 491 SMART WRKY_cls 276 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03013 491 MobiDBLite consensus disorder prediction 159 178 - -
Seca6g03013 491 Pfam WRKY DNA -binding domain 278 335 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca6g03013 491 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 70 481 IPR044810 GO:0003700
Seca6g03013 491 MobiDBLite consensus disorder prediction 205 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03013 Seca-Chr6 96181151 96184297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g03013 69 472 WRKY Transcription Factor Family AT4G04450 45.047 1.26e-99 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca6g03013 WRKY 4.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03013 - - gmx:100804246 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g00422 8 4862650 4864947 Seca6g03013 6 96181151 96184297 PCT