Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g03006 ATGGGTAGCGAAGAAGAGAGGGTTCTCGAGAAGCAACTCGAGCTTCAATTGCATGAGCAAAGGGATTCTCTCTCTGCTATCGATCAGGCTCTCCTCTCTGATCCAACCAACACCGAGCTCCTTGCGGCAACAAGTGAACAACAACCCATACAACCAGAAATTAGGGAAGTAAAGAACCCCAGACTCAGTCCTAGTCGAAGTCACACAACTCAGAACCCTTGGTCAAAGTTGCATCAATCATCTCAGTTGCACTTCATCGCAGAGTTGTGGTCGCCGGAAGGAAGACGTCAAGACGATTTGGACAGGCAGAAGGGTGAAATTAGGTTTGACATCACCGGACTGGGGGATTTAAGCCTGGTTCACGAGGAGCTTGTTCAGGCAATTAAGGATGCAGAGGAAGGACTTCTTCACTTGAAACGTGCAAGATTATTACAGGAAGCAGATTCAGTGTTGCACAGCATTAACATTTTTACTGAAGAAGAGAAAGTGGAGCCCCTTGATCCCACAGATGTTGAACCAGAGCCGCTGGAGGAAAAAGGCTATTCCATTGGATCCAAATGTAGATTCCGTCACAGAGATGGGAGGTGGTACAATGGTCAAGTGGTGCAGTTGGATAATTCAGTGGCAAAGATTTCGTTCCTTACTCCTACATCTGAGAATATGCTGAACACCAAAGTGCAGATGTGCAAGTTCTTTTTACAACAACGATGTCGATTTGGTACTAACTGTCGCCTATCACATGGAGTTGATGTTCAATTGCCCTCCCTTAAGAAGTATGCCCCAACAGTCTGGAATCCGTCCCTTGTGGGGTCAACTATATGGGCAGTCTCAAATGCAAATGCAGGCATTTGGAGAGAAGCTGAGCTTGAGTCCTGGAACGAAGAAGCCGGAGTTGGACAAGTTGTTTTCCGAGATGATGGAAGTTCTATGAAGCTTGGTGCAGAAGGAATGGTATTATCTGAATATGCAGAAGTGAGTGACTTAGAGAGTGATTCCAGCTTAGAACAATCCGATTCTAGTGACTATGAGGAAGAAGAGGAAGAGGAATCACAGGGTTTAGGATTTCTGGAAAGTACCAACCTACAGAAAGGTATTCAAACTGAAACTGCTATATTTGCCAAGTGGGAGAACCACACTAGAGGTGTAGCCTCCAAAATGATGGCTAATATGGGTTACCGAGAAGGAATGGGTTTAGGTGTAACTGGTCAGGGAATGCTAGATCCCATACCAGTGAAGGTCCTACCACCAAAGCAATCCTTAGATCATGCACTCGAGTCACATAAAGGAGAAGAGATCACAGAGAAGCAAGGTAAGAAAAGGAGCAGAGGAGGTAAGAGAAAACGCGAGAAGAAATTCGCAGAAGCAAATCGTGCAGCGAAAGAGGAAGAAGAATCTGCATCAGATGTCTTCACACTAATAAATAATCATCTGGCACTGCATGGTGAAGCTTCTAATGAAGGATCAATGAAGAAGCAGCAAAGTAAAAGCTCAGGTGAAGGTAAAAAGGTGGATCGTCGGGCATTGATTGCATATGAGGATGAGGTGAAGGATTTGAAGGTGCGGGTTGAAAAGCTTGAACAAATGGTGAATGCAAACAGAAAAGAAAAGGCTGTTTATGATGCTGCCATGAGAAAGTTGATTCAAACCCGCAAGGCTTTGGCAGACGCCGAAGCAGTTCACGCCTCCGCGTCAAATGCAGTTGTTAGCAAAGAAAAAGAAAAGAGATGGCTGAAGTTTTAG 1740 0.45 MGSEEERVLEKQLELQLHEQRDSLSAIDQALLSDPTNTELLAATSEQQPIQPEIREVKNPRLSPSRSHTTQNPWSKLHQSSQLHFIAELWSPEGRRQDDLDRQKGEIRFDITGLGDLSLVHEELVQAIKDAEEGLLHLKRARLLQEADSVLHSINIFTEEEKVEPLDPTDVEPEPLEEKGYSIGSKCRFRHRDGRWYNGQVVQLDNSVAKISFLTPTSENMLNTKVQMCKFFLQQRCRFGTNCRLSHGVDVQLPSLKKYAPTVWNPSLVGSTIWAVSNANAGIWREAELESWNEEAGVGQVVFRDDGSSMKLGAEGMVLSEYAEVSDLESDSSLEQSDSSDYEEEEEEESQGLGFLESTNLQKGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVTGQGMLDPIPVKVLPPKQSLDHALESHKGEEITEKQGKKRSRGGKRKREKKFAEANRAAKEEEESASDVFTLINNHLALHGEASNEGSMKKQQSKSSGEGKKVDRRALIAYEDEVKDLKVRVEKLEQMVNANRKEKAVYDAAMRKLIQTRKALADAEAVHASASNAVVSKEKEKRWLKF. 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g03006 579 Coils Coil 121 141 - -
Seca6g03006 579 MobiDBLite consensus disorder prediction 326 359 - -
Seca6g03006 579 MobiDBLite consensus disorder prediction 334 352 - -
Seca6g03006 579 SMART c3hfinal6 223 249 IPR000571 GO:0046872
Seca6g03006 579 MobiDBLite consensus disorder prediction 480 502 - -
Seca6g03006 579 MobiDBLite consensus disorder prediction 43 77 - -
Seca6g03006 579 Gene3D - 182 260 - -
Seca6g03006 579 Pfam G-patch domain 379 421 IPR000467 GO:0003676
Seca6g03006 579 MobiDBLite consensus disorder prediction 424 438 - -
Seca6g03006 579 ProSiteProfiles Zinc finger C3H1-type profile. 223 250 IPR000571 GO:0046872
Seca6g03006 579 Coils Coil 445 465 - -
Seca6g03006 579 ProSiteProfiles G-patch domain profile. 379 425 IPR000467 GO:0003676
Seca6g03006 579 SMART G-patch_5 377 423 IPR000467 GO:0003676
Seca6g03006 579 MobiDBLite consensus disorder prediction 448 466 - -
Seca6g03006 579 MobiDBLite consensus disorder prediction 63 77 - -
Seca6g03006 579 Coils Coil 508 535 - -
Seca6g03006 579 SUPERFAMILY CCCH zinc finger 223 248 IPR036855 GO:0046872
Seca6g03006 579 MobiDBLite consensus disorder prediction 424 466 - -
Seca6g03006 579 Pfam CCCH-type zinc finger 228 248 IPR041367 -
Seca6g03006 579 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 116 579 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g03006 Seca-Chr6 96073245 96080386 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g03006 G-patch 2.6e-11 CL0449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g03006 - - gmx:100794921 660.603