Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02995 ATGGCATCTGCTTCAGACTCATGGATGAAGGAATATAATGAAGCAATGAAACTAGCCGATGATATTAGTGGCATGTTTTCTGAACGGAGTTCATTTCCTGCATCTGGACCAGAAACCCAGCGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGAACAAGGCTTGATAGTTTGCAGTCCCTTTTATCAAAGCTCCCTGTAAAAATGATGCACAGGTCTGAGAAGGATATGAATCGTCGTAAGGACATGCTTGCAAATTTGAGGTCGAAAGTTAACCAAATGGCTTCAACATTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTTGGGCCAGATATAAAGCCAGATGCAATGAGCAGAACTGTTGGCTTGGATAACAGTGGACTCGTTGGTCTTCAACGGCAAATTATGAAAGAGCAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTAATAAGTACAAAACATATTGCATTGGCAGTGAATGAAGAGCTGAATCTACACACTAGACTCATTGATGACTTGGACCAACATGTAGATGTTACAGATTCTCGGCTGAGGCGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACCAAAGGTGGTTGCTCCTGCTTGTGCATGCTTTTATCAGTGGTTGGTATTGTGGTTTTGGTGGTTGTTATATGGCTATTGGTGAAATATTTGTAA 702 0.4117 MASASDSWMKEYNEAMKLADDISGMFSERSSFPASGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKMMHRSEKDMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPDIKPDAMSRTVGLDNSGLVGLQRQIMKEQDEGLEKLEETVISTKHIALAVNEELNLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCSCLCMLLSVVGIVVLVVVIWLLVKYL. 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02995 233 FunFam syntaxin-51 isoform X2 139 201 - -
Seca6g02995 233 Pfam SNARE domain 174 225 IPR000727 -
Seca6g02995 233 SUPERFAMILY SNARE fusion complex 128 198 - -
Seca6g02995 233 PANTHER SYNTAXIN 40 220 IPR045242 -
Seca6g02995 233 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 137 199 IPR000727 -
Seca6g02995 233 CDD SNARE_Qc 140 197 - -
Seca6g02995 233 Gene3D - 139 201 - -
Seca6g02995 233 SMART tSNARE_6 132 199 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02995 Seca-Chr6 95925389 95930352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02995 1 233 SNARE and Associated Proteins AT1G16240 72.222 1.08e-123 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02995 K08503 - gmx:100794038 378.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02995 6 95925389 95930352 Seca6g02995 6 95925389 95930352 ECH
Seca6g02995 6 95925389 95930352 Seca6g02995 6 95925389 95930352 PCT