Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02987 ATGGCATCTTCAGATGATGAGGGCGATACTCAGCCACTATCTGTGTCAAATTACTATTTTGTTGATGACAAAGATGATATTGTATGTTTTTCTGTGTTGCCAATTCAATGGAGTGAGTCTGAGAGTTTGGATGGGAAGAAAGAGGTGTTCGTGAATGGTTCATCGGATAATGGGCTGCAGAAAATTTTCAAGCAAGTAACAGCGTGGAGGTTTGATCTTTCCAATGTGAAGCCTGAGATATCAGTGCTATCAAAGGATGTGGGATGGATCAAACTTCAGAAGCCAAGGAAGAGCTATGAAGATACCATAAGGACTATTTTAATCACCATTCATTTCCTGAATCATGTGAAGAAGAATCCTGACATTTCTGCCAAATCTATGTGGGATAACTTGAGTAAGAATAAGGAGTTTAGCTCTTATGAGGTTATCCCCTCGCAAAAGGACTTATTAAACCATATGGCTTTAATGGGGGAAGCTTCCAAAAGGGATGCTGCCTTAGCTAAGTCCAAGCTTTTGCTCATGGTTTTGGAAGATAAGGATAAGCTGAGGATTAAGAAGCTTTCTGATGAGGAAGCTAAAGATTTAGAACGACCTGGATTTATAATTGATGATATTGACAATGACAATGACATGATTGAGGAAACTGCAGAAGAGTCAGATGAAGAGGATGAGTTGTTTGATTCTGTTTGTGCAATTTGTGACAACGGTGGTGAACTTTTGTGTTGTGATGGAAAGTGTATGAGGTCCTTTCATGCTAATAAGGATGATGGTGAAGAATCTTGTGTCTCTCTCGGTTTTAGCAAGAAGAAAGTTGATGAGATCCAAAACTTCTACTGTAAGAATTGTGAATATAATCAGCACCAGTGCTTTGCATGCGGCAAGCTAGGCTGTTCTGATAAATTTTCGGGTGCTGAGGTCTTCAAATGCGCTTCTGCAACCTGTGGCTTCTTTTATCATCCACTTTGTGTTGCAAAGTTACTTCACCGGGTGATTGAGGATGCTCCAACAGAACTTGAGAAAAATATAGCTAAGGGGGAGCCTTTTACTTGCCCTACACATTATTGCTGTGTCTGCAAGGAAATGGAAGACAAGAATGAACATGAATTACAATTTGCTGTTTGTAGGCGTTGTCCCAAGTCATACCATCGTAAATGTCTGCCAAGAAAGATTGCTTTTAAAGACAAAGTGGATGAAGGTATTATAAAAAGGGCTTGGGAAGGACTTTTACCAAACAACCGCATTCTGATCTATTGCTTAAAGCATGAGATCGATGAAGAACTTGGGACTCCTATAAGAGATCATATAAAATTCTCCAATGGTAAAGCTACTGTTCGAGAAATTAAGACTGAAGAGAAGACAAAGCCTCCAACCAAAGAGAGAGTTATATTGAACAAGAACAATGTAGAATCAGATAATTTACTTACCAAAAAAACTAGTACTAAGGTATCTAAAATGTCTGAGAAAATGTCTTCTGGGAAAGTCATCAAGAAATCTGAAAAGATTTCTGGATCAAATGTATCAAGGAAGAAAGCTAATGAAGCATCAAGGTGTTTGAATGAAAATAAGAGATCGATCTCAAAGGAAACTGAAAGGTCTGACCATGAGGAAAACCAACCCTCCCTGGGTGAGCAACTATATGCTTTCTGGCAGAAGGGTTCTGAAAAAATTAGTTCTGGCAATCAGGTTGATAATGTAGCTAATAACACCCTGTCTGTTAAACCTACTAAAAAGCTGAGTAGTGCATTGCTCCCATTAGATGCAGATTCAGAAAGGAGATTGTTGGCTTTGTTTAAAGAATCTATGTCATCAATTACTTTGGAGGATGTGATAAAGGAACATAAATTTGCTTCTACCCACACTCATTCATTGAAAAATGTTGTGGAGAAGACCATTACAGTGGGGAAGTTGGAAGGCTCAGTTGAGGCTGTTCGAACAGCTCTAAAGAAGCTGGAGGCTGGGCACAACATTCGGGATGCAGAAGCTGTTTGTGGCCCTGATGTTCTAAACCAGATATTTAAGTGGAAGGACAAGTTGAAAGTATATCTTGCACCTGTTCTAATTGGTAATCGCTACACATCATATGGTCGCCATTTCACACAAGTGGAAAAACTTGAAGGGATTGTTGATAAACTCCATTGGTATGTTCAGAATGGTGATACAATTGTGGACTTCTGTTGTGGTGCTAATGATTTTAGCATTCTTATGAAGAAAAAGCTTGATGAGACTGGGAAGAGATGCTCATACAAAAACTATGATTTACTTCCAACAAAGAATGATTTTAATTTTGAGATGAGAGATTGGATGACTGTCCAGAGAAAGGAGTTGCCTGCAGGGTCGCAATTGATTATGGGCCTTAATCCCCCCTTTGGGCTTAAAGCAGCTTTGGCCAACAAGTTTATAGACAAAGCTCTTGAGTTTGAACCGAAGCTCCTGATTCTTATAGTACCACCAGAGACAGAGAGGCTAGATAAAAAACGGTTGCCGTATGATCTTGTCTGGGAGGATGATAAGTTTCTAGCAGGCAAGTCATTTTATCTACCTGGATCAGTTGATACTTACGACAAGCAAATGGTACAATGGAATAAAAAGCCACCCCCAGTTTACCTTTGGAGCCGTCAGGACTGGACTGATAAACATATGGTCATAGCTCGGGAGCATGGTCACCTTATCAGCCAGCATACAGTATCAAAAATGGAAAGCTTTGATAATGAAAAAGCAACTGCCAGTCATACTATGGATGATAACTATGGTGATGATCTCGTGAAGTCAACTGATGATGAAGATCAAACATCTATGCATGAAGGACAGAAAGGAAGCTTGATTCATGAAAATGTTGATCGAGAGAGTCAAGAGAGAGAGGAATATTGGGTCAGCAAGGCTGAGAAGACCTCATGGAAGAGGAAACGAACTGAGGAAAATGATCGAAGAGGACCAGCTGTGACCTCACCAGCCAAAAGGCAAGCTATAAATCAAATGCCTGAGAGAGTACTGGGCCGTGGTATATCCAATCCAGTTGATGGGAGATCCTCAGTTGAAGGTTTTCAGCCCAAATCTGATATGATACCTCCATATTTTGAAGTTAGTGATAATGGTTGTAGGCAGCATCTGGAGCCCAGCTTGGAGTTAGGGGTAGCATATGATGGGACCCAAAAATGGCCAAGTGTTCCCAATCCCCTTTCTGACTATGGGGTTACAGATAAAGATGAACACCATAGCAGCCTTCTGGGAGACAGCTCCAATAGCATTGGACGTAGACCCTACATCAGGGAGGATGATATGTACCTGAGGGAACTAGAGACAAGGCAACAGGTTCCCCTTTATGGCCTTCAGAATCCTGATTATATGAGAAGTAATTATCTATCTGGTCATGATCCTGCTTATAGCCATATGGGATCTAGTTATTCAGTACTTGGTTCAGTATCTGAGCCGTCTTACATGATGAATTCACCGGCTATGCAACGATATGCACCTCGCCTTGATGAATTAAACCATGTCAGGATGGACTCTTTGGGGTCTGAACCTCCTATAATTGGTAGAAATGGCATTTCTGAACGTAATGTGCCCCAACCTGGATATAGAAATGGGCTTCTGGGGTTTGCAGCTGGTCCTCACCATTTGTATTCACGCCAGAATTCAGCAGGTCGGTTTCAATGA 3654 0.4083 MASSDDEGDTQPLSVSNYYFVDDKDDIVCFSVLPIQWSESESLDGKKEVFVNGSSDNGLQKIFKQVTAWRFDLSNVKPEISVLSKDVGWIKLQKPRKSYEDTIRTILITIHFLNHVKKNPDISAKSMWDNLSKNKEFSSYEVIPSQKDLLNHMALMGEASKRDAALAKSKLLLMVLEDKDKLRIKKLSDEEAKDLERPGFIIDDIDNDNDMIEETAEESDEEDELFDSVCAICDNGGELLCCDGKCMRSFHANKDDGEESCVSLGFSKKKVDEIQNFYCKNCEYNQHQCFACGKLGCSDKFSGAEVFKCASATCGFFYHPLCVAKLLHRVIEDAPTELEKNIAKGEPFTCPTHYCCVCKEMEDKNEHELQFAVCRRCPKSYHRKCLPRKIAFKDKVDEGIIKRAWEGLLPNNRILIYCLKHEIDEELGTPIRDHIKFSNGKATVREIKTEEKTKPPTKERVILNKNNVESDNLLTKKTSTKVSKMSEKMSSGKVIKKSEKISGSNVSRKKANEASRCLNENKRSISKETERSDHEENQPSLGEQLYAFWQKGSEKISSGNQVDNVANNTLSVKPTKKLSSALLPLDADSERRLLALFKESMSSITLEDVIKEHKFASTHTHSLKNVVEKTITVGKLEGSVEAVRTALKKLEAGHNIRDAEAVCGPDVLNQIFKWKDKLKVYLAPVLIGNRYTSYGRHFTQVEKLEGIVDKLHWYVQNGDTIVDFCCGANDFSILMKKKLDETGKRCSYKNYDLLPTKNDFNFEMRDWMTVQRKELPAGSQLIMGLNPPFGLKAALANKFIDKALEFEPKLLILIVPPETERLDKKRLPYDLVWEDDKFLAGKSFYLPGSVDTYDKQMVQWNKKPPPVYLWSRQDWTDKHMVIAREHGHLISQHTVSKMESFDNEKATASHTMDDNYGDDLVKSTDDEDQTSMHEGQKGSLIHENVDRESQEREEYWVSKAEKTSWKRKRTEENDRRGPAVTSPAKRQAINQMPERVLGRGISNPVDGRSSVEGFQPKSDMIPPYFEVSDNGCRQHLEPSLELGVAYDGTQKWPSVPNPLSDYGVTDKDEHHSSLLGDSSNSIGRRPYIREDDMYLRELETRQQVPLYGLQNPDYMRSNYLSGHDPAYSHMGSSYSVLGSVSEPSYMMNSPAMQRYAPRLDELNHVRMDSLGSEPPIIGRNGISERNVPQPGYRNGLLGFAAGPHHLYSRQNSAGRFQ. 1218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02987 1217 CDD PHD3_NSD 354 421 - -
Seca6g02987 1217 SMART PHD_3 288 354 IPR001965 -
Seca6g02987 1217 SMART PHD_3 229 283 IPR001965 -
Seca6g02987 1217 SMART PHD_3 355 422 IPR001965 -
Seca6g02987 1217 Coils Coil 202 222 - -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 998 1017 - -
Seca6g02987 1217 CDD PHD2_NSD 288 353 - -
Seca6g02987 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 285 IPR013083 -
Seca6g02987 1217 PANTHER PHD FINGER-CONTAINING PROTEIN DDB_G0268158 5 906 - -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 513 538 - -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 497 512 - -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 478 540 - -
Seca6g02987 1217 SUPERFAMILY FYVE/PHD zinc finger 214 285 IPR011011 -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 902 986 - -
Seca6g02987 1217 Pfam Cytosine specific DNA methyltransferase replication foci domain 14 133 IPR022702 -
Seca6g02987 1217 MobiDBLite consensus disorder prediction 902 979 - -
Seca6g02987 1217 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 396 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02987 Seca-Chr6 95861198 95877035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02987 218 329 PHD Transcription Factor Family AT3G14980 30.357 7.22e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02987 - - gmx:100803073 1779.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02987 6 95861198 95877035 Seca6g02987 6 95861198 95877035 ECH
Seca6g02987 6 95861198 95877035 Seca6g02987 6 95861198 95877035 PCT