Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02980 ATGCCAGAGAGAGAAGTTTGCAGTCATGTCAAAGAGCCTCGTCTTGTAGCCAGGAAGTTCTTGGCCAGACCTCAACGTGAAGGTATTGGGGCTGTTGTTAGAAGAAGCATAGGAAGGTTTGAGCTCAAGTACTTTGATCCGTTCCTTGTCTTGGATGAATTCTCAGTTACTGCTCCTGGTGGCTTTCCTGATCACCCACACAGAGGCTTTGAGACGGTTACATACATGTTGCAGGTAGAGCAAATTGAATATTTCAATTCACATGCTTCTTCCCATGCTCAACTCATGCTGCCTATAAAACTGTTTGCAAATCATTGGTGA 321 0.4455 MPEREVCSHVKEPRLVARKFLARPQREGIGAVVRRSIGRFELKYFDPFLVLDEFSVTAPGGFPDHPHRGFETVTYMLQVEQIEYFNSHASSHAQLMLPIKLFANHW. 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02980 106 SUPERFAMILY RmlC-like cupins 14 84 IPR011051 -
Seca6g02980 106 Pfam Pirin 33 79 IPR003829 -
Seca6g02980 106 Gene3D Jelly Rolls 27 88 IPR014710 -
Seca6g02980 106 PANTHER PIRIN-RELATED 4 80 IPR012093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02980 Seca-Chr6 95797596 95798556 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02980 13 78 Calmodulin-binding Proteins AT3G59220 59.091 9.48e-23 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02980 K06911 - gmx:100811930 149.828
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02980 6 95797596 95798556 Seca6g02980 6 95797596 95798556 ECH
Seca6g02979 6 95794775 95796905 Seca6g02980 6 95797596 95798556 PCT