Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02979 ATGATTCAGGGAGCTGTAAAACATGAAGATTTTGAAGGACATAAGGGAACAATAGAAGCTGGTGACTTGCAGTGGATGACTGCAGGGAGAGGGATAGTTCACTCAGAAATCCCTGTGGCTCAAGGAACCCAAAAGGGTCTGCAACTGTGGATCAACCTTGCTTCCAAATATAAAATGATTGGACCAAGTTATCAAGAAGTGTTGAGTAAGGACATAGCAGAAGCTGTGGAAAATGGTATCAAGGTTAGAATTATAGCTGGGGAAGCTTTTGGGACAAAGTCTCCAATCTACACAAGGACTCCAACCATGTACTTGGACTTTTCTCTCAAACCTGGAGCTCACTTACAACAACATATACCAAAAACTTGGAATTCTTTTGTTTATATTTTGGAAGGAGAGGGTGTGTTTGGAAACCTGAAATCTCAGCCTGCAAACTCTCACCATATCCTTCTTCTTGGTCCTGGGGATGGCCTAGAGGCATGGAACAAATCTTCTAAGATCCTTAGGTTCATTTTGGTTGGAGCTGAACCTCTGGGGGAACCTATGGTGCAATTTGGACCCTTTGTGATGAACACTCAAGAAGAGATTGACCAAACCATTGATGATTTTGAGAACTTTGCTAACGGATTTGAGAAAGCAAGAAATTGGAGATCTGAAAGCGCAATTAGCCTTGACTTTTGA 681 0.42 MIQGAVKHEDFEGHKGTIEAGDLQWMTAGRGIVHSEIPVAQGTQKGLQLWINLASKYKMIGPSYQEVLSKDIAEAVENGIKVRIIAGEAFGTKSPIYTRTPTMYLDFSLKPGAHLQQHIPKTWNSFVYILEGEGVFGNLKSQPANSHHILLLGPGDGLEAWNKSSKILRFILVGAEPLGEPMVQFGPFVMNTQEEIDQTIDDFENFANGFEKARNWRSESAISLDF. 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02979 226 Gene3D Jelly Rolls 1 204 IPR014710 -
Seca6g02979 226 Pfam Pirin C-terminal cupin domain 104 208 IPR008778 -
Seca6g02979 226 PIRSF Pirin 1 217 IPR012093 -
Seca6g02979 226 PANTHER PIRIN-RELATED 1 220 IPR012093 -
Seca6g02979 226 Gene3D Jelly Rolls 73 178 IPR014710 -
Seca6g02979 226 Pfam Pirin 1 51 IPR003829 -
Seca6g02979 226 SUPERFAMILY RmlC-like cupins 1 218 IPR011051 -
Seca6g02979 226 CDD cupin_pirin_C 101 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02979 Seca-Chr6 95794775 95796905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02979 1 224 Calmodulin-binding Proteins AT1G50590 63.090 2.55e-102 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02979 K06911 - gmx:100790637 411.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g02979 6 95794775 95796905 Seca6g02979 6 95794775 95796905 ECH
Seca6g02979 6 95794775 95796905 Seca6g02980 6 95797596 95798556 PCT