Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g02974 ATGAAAAATGCACTAAAAAAGCTTCAACACTTCATTCATGAAGAAGATAAAAATGATGCTGCAACAGAGGAAGATAAGAAAAAGGTGAAGCAGCTGATAGAAGCAGCTTTTCGCATGGAAGATATCATTGATGAATATTTGATCATTGGAGAGCAAGAGTCTCGTGATCCTGGATGTGCAGCTTTACCAGATGATGCTGCTGACTTCCTCAAAACCATGTCCCTTCGTCTTCAAATTGCTTATAAGATTCAATACATTAAATCACAACTTCCTGAGATTGAGGAAAAAAGTAAAAGTGATGGTGGCTCCAAAATCCAATCTTCATTGGAACAAGGACCAAGCAATTCTGGTGGAAACCAAAATGTGACATTGCAGAACCTTCGAGAGGCTCCCCTTTACATGGAGGAAAGTGATTTTGTGGGGTTTGAAACCCCAACAGCTGAATTGATTGATTGGTTAGAGAATGGAAAAGCAGAACGCACTGTCATCTTTGTGGTAGGAATGGGAGGGCAAGGGAAAACCACTCTTGTCAAGAAAGTTTTTGACAACAAGAAGATGATTGGGAAGTTTGATCATCGTGCATGGATCACAGTGTCTCAGGACTACACTATAGAAGGGGTGCTGAAGGACATGTTGGTGAAGTTTTACAAACAAAAAGAAGCAGATCCTCCTCAGAGTATTTTCGCAATGGATAGAAGGTCACTGATTGAAGAAGTGAGAAACTACTTGCAAAAAGGGAGGTTTGTTGTGGTATTTGATGATGTATGGAATGTAAATTTTTGGGATGAGATTGAATTTGCTGTAGTTGATAAGAAAAATAAAAGTAGGATAATAATCACAACAAGGAGAGCTGATGTTTCCATGTCTTGTAAGAAATCTTCATTTGTTCAAGTGCATAAGCTGCAACCTTTAACTGAAAAAGAATCTTTGGATTTGTTCTATAAGAAGGCATTCTTTAGCAATAATGGATGTTGTCCTGAAAACCTTAGGACTATATCTGCTGAGATTGTTAAAAAATGCAAGGGTTTACCTCTAGCAATTGTGGCCATTGGTGGTGTTTTAGCTGGCAGGGAGAGTGAAGATGTATCTGAATGGGAAAGGTTTAGTGAAAATAAGAGACTAATTTGTCAATGGATAGCAGAAGGGTTTGTGAAAGAGGAAAAGGGGATGGAGAGTTTGGAGAAAGTTGCAGAAGGATATTTAAAAGAGTTGATCCTAAGAAGTTTGGTGCAAGTATCTTCATCTAGCATTGATGGCAAAGTTAGAAGTTGTCAAGTTCATGACCTAATACGTGAGATGATCCTTAGAAAATTTGAGGATTTAAGCTTTGGCCAATTTATTGGTGATGATGATAAGTCAAACTTAAGTGGGATAAGTAGGCACCTATCAATAGCAACCACTTCCAAAGATTTAACAGGAACCATTGAGAGCTCCCAAGTTCGGTCATTGCATTTCTTCAATGAGGTAGAATTACCTGAATTCCTTATCAGGAGAATCCCTATTAAATACATGCTTAAGGTACTTGATTTTGAAGGTGCTAAATTTAATTATGTCCCTGAAAACTTGGGGAATTTGATCCACTTGAAATATTTAAGCTTCAGGAATACATGGCTACAAGATCTTCCAAAATCCATTGGTAAGCTGCAGAACCTGGAGACATTGGATCTAAGGGCAACACATGTGCATGAGATACCAAAGGAGATTAGCAAGCTTAGAAAGCTACAACATCTACTAGGTGATTTTATGTCTTTGATTCAATTAAAGGATAGTATTGGAGGCATGGCATCCCTACAAACTCTACATAAGGTGAAAATAGGTGAATATGATGATGTAGAGATAATTATAGAGCTGGAAAAGTTGGTGAAGTTAAGGGAGTTGAGATTGACTTTACATTCATCTGATCGAAAACATGCAGTCTTTCTATGTTCCTCAATAAATAAGATGCTACACTTGGTGAAATTACATGTTGAATTCACTTGTGTAATTGAAGCCCCTACTTTGCATTTTATTTCATCCCAACTTAAGCTTCAAAAGCTTTGTCTAGATGGGGAGTTATATAAGTTACCAAAGTGGATTCCAAAGCTTCAAAATCTTGTCAAGTTGACCTTGATAAACTCCAACTTAACTAAGGATAAACTAAAGGAACTAGAACTGGCACTTTTGGATAACTTGAATTCCATTGTTATTGACAAAGGAGCACTACATTCTTTGAAAAAGCTTCAATTGATGGGGATCACCCAACTCAAAACAGTACCTACTGGCTTCCAGCACTTGAAGAAGCTTGAAGTTCTTGATATTGTGATTATGCCAACTGAATTTGTGCAGAGCATTGATCCTGATGGAGGTCAAGAGCATCGGATCATCGAGCATGTACCCCTTGTAACTATTCGTTGA 2394 0.378 MKNALKKLQHFIHEEDKNDAATEEDKKKVKQLIEAAFRMEDIIDEYLIIGEQESRDPGCAALPDDAADFLKTMSLRLQIAYKIQYIKSQLPEIEEKSKSDGGSKIQSSLEQGPSNSGGNQNVTLQNLREAPLYMEESDFVGFETPTAELIDWLENGKAERTVIFVVGMGGQGKTTLVKKVFDNKKMIGKFDHRAWITVSQDYTIEGVLKDMLVKFYKQKEADPPQSIFAMDRRSLIEEVRNYLQKGRFVVVFDDVWNVNFWDEIEFAVVDKKNKSRIIITTRRADVSMSCKKSSFVQVHKLQPLTEKESLDLFYKKAFFSNNGCCPENLRTISAEIVKKCKGLPLAIVAIGGVLAGRESEDVSEWERFSENKRLICQWIAEGFVKEEKGMESLEKVAEGYLKELILRSLVQVSSSSIDGKVRSCQVHDLIREMILRKFEDLSFGQFIGDDDKSNLSGISRHLSIATTSKDLTGTIESSQVRSLHFFNEVELPEFLIRRIPIKYMLKVLDFEGAKFNYVPENLGNLIHLKYLSFRNTWLQDLPKSIGKLQNLETLDLRATHVHEIPKEISKLRKLQHLLGDFMSLIQLKDSIGGMASLQTLHKVKIGEYDDVEIIIELEKLVKLRELRLTLHSSDRKHAVFLCSSINKMLHLVKLHVEFTCVIEAPTLHFISSQLKLQKLCLDGELYKLPKWIPKLQNLVKLTLINSNLTKDKLKELELALLDNLNSIVIDKGALHSLKKLQLMGITQLKTVPTGFQHLKKLEVLDIVIMPTEFVQSIDPDGGQEHRIIEHVPLVTIR. 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g02974 797 Pfam NB-ARC domain 144 370 IPR002182 GO:0043531
Seca6g02974 797 FunFam Probable disease resistance protein At1g61300 122 294 - -
Seca6g02974 797 Gene3D - 1 80 - -
Seca6g02974 797 SUPERFAMILY L domain-like 426 766 - -
Seca6g02974 797 Gene3D Ribonuclease Inhibitor 468 776 IPR032675 -
Seca6g02974 797 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 124 374 IPR027417 -
Seca6g02974 797 Gene3D - 373 437 IPR036388 -
Seca6g02974 797 MobiDBLite consensus disorder prediction 96 122 - -
Seca6g02974 797 MobiDBLite consensus disorder prediction 102 122 - -
Seca6g02974 797 PRINTS Disease resistance protein signature 340 354 - -
Seca6g02974 797 PRINTS Disease resistance protein signature 242 256 - -
Seca6g02974 797 PRINTS Disease resistance protein signature 162 177 - -
Seca6g02974 797 PRINTS Disease resistance protein signature 546 562 - -
Seca6g02974 797 PANTHER DISEASE RESISTANCE PROTEIN RP 27 368 IPR044974 GO:0006952
Seca6g02974 797 Gene3D - 303 372 IPR042197 -
Seca6g02974 797 Gene3D - 124 299 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g02974 Seca-Chr6 95712244 95714866 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g02974 162 358 WRKY Transcription Factor Family AT5G45050 31.343 1.83e-11 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g02974 K13457 - gmx:100819372 696.812